feat(b-values): implement parsing for multiple b-value formats and update default setting
This commit is contained in:
Ross
+302
-244
@@ -40,256 +40,314 @@
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<script type="module" src="/src/main.tsx"></script>
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<script>
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// Viewer state to import
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const state = {
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stacks: [
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VOILUTFunction: "LINEAR",
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colormap: { name: "Grayscale", opacity: [] },
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// Viewer state to import
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||||
const state = {
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grid: { rows: 1, cols: 3 },
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modes: ["stack", "stack", "stack"],
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stacks: [
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|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_628_51IriRz.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_616_sc6CY4V.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_604_HG8um6d.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_624_qr7EmUd.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_612_NUr6yLq.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_600_ngZGDnx.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_620_FfONZ99.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_608_j131qxy.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_596_stFfHXn.dcm",
|
||||
],
|
||||
},
|
||||
{
|
||||
i: [
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_792_og2P5S6.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_793_3tKkg87.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_794_s8FB3dq.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_795_8HeRpXV.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_796_tllvzjH.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_797_AXieNgu.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_798_L8YapjK.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_799_kvuLUsW.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_800_i2eSNzF.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_801_dR3KPL5.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_802_cDgm138.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_803_Bj3PZyX.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_804_CEqcWo2.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_805_5R2LmiA.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_806_RgmKU6b.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_807_BKTkmJv.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_808_OQOf2MC.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_809_lxnU3mr.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_810_8vG5Ett.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_811_poX6D2s.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_812_k46Ws88.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_813_7Ft4JOE.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_814_V5lJKxR.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_815_1hFehRl.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_816_34UqY7Z.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_817_YG28gpL.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_818_wonhIz5.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_819_bv3zaOx.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_820_xEjnfcI.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_821_cH9fPxl.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_822_lWmBHxs.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_823_ybix6Gz.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_824_q430lCK.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_825_28trFVc.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_826_7BF6HBF.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_827_ipmO3HH.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_828_Zuppb9h.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_829_TMuror5.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_830_Mnaj7oR.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_831_2U6zI7M.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_832_V9fvVdM.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_833_AAFaoOW.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_834_vxBJLIn.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_835_ZppFa6u.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_836_adRHoD3.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_837_jjfHCn3.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_838_N21h3ne.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_839_n6FWmeX.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_840_dErur0M.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_841_PcoTakk.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_842_UmTu7Fg.dcm",
|
||||
"wadouri:https://www.penracourses.org.uk/media/atlas/dicom/IMG_843_USByQXH.dcm",
|
||||
|
||||
function callWhenReady(fnName, payload) {
|
||||
const maxWait = 5000;
|
||||
const start = Date.now();
|
||||
(function check() {
|
||||
if (window[fnName] && typeof window[fnName] === "function") {
|
||||
try {
|
||||
window[fnName](payload);
|
||||
console.log("imported viewer state via", fnName);
|
||||
} catch (e) {
|
||||
console.error("importViewerState call failed", e);
|
||||
}
|
||||
return;
|
||||
}
|
||||
if (Date.now() - start > maxWait) {
|
||||
console.warn("Timed out waiting for", fnName);
|
||||
return;
|
||||
}
|
||||
setTimeout(check, 2000);
|
||||
})();
|
||||
}
|
||||
],
|
||||
|
||||
document.addEventListener("DOMContentLoaded", () => {
|
||||
// Ask the viewer to load the stacks first (via exposed API), then wait 2s and import the viewer state.
|
||||
(function loadStacksThenImport() {
|
||||
if (!state.stacks || !Array.isArray(state.stacks)) {
|
||||
callWhenReady("importViewerState_main_viewer", state);
|
||||
return;
|
||||
}
|
||||
}
|
||||
],
|
||||
stackIdx: [0, 2, 1],
|
||||
stackPos: [0, 0, 2],
|
||||
props: [
|
||||
{
|
||||
voiRange: { lower: 39.150000000000034, upper: 559.1700000000001 },
|
||||
invert: false,
|
||||
interpolationType: 1,
|
||||
VOILUTFunction: "LINEAR",
|
||||
colormap: { name: "Grayscale", opacity: [] },
|
||||
},
|
||||
{
|
||||
voiRange: { lower: 23.330000000000013, upper: 333.23 },
|
||||
invert: false,
|
||||
interpolationType: 1,
|
||||
VOILUTFunction: "LINEAR",
|
||||
colormap: { name: "Grayscale", opacity: [] },
|
||||
},
|
||||
{
|
||||
voiRange: { lower: 35.47000000000003, upper: 504.35 },
|
||||
invert: false,
|
||||
interpolationType: 1,
|
||||
VOILUTFunction: "LINEAR",
|
||||
colormap: { name: "Grayscale", opacity: [] },
|
||||
},
|
||||
],
|
||||
cam: [
|
||||
{
|
||||
viewUp: [
|
||||
-0.00001587091537658125, -0.015633516013622284,
|
||||
0.9998778104782104,
|
||||
],
|
||||
viewPlaneNormal: [
|
||||
0.9999420159200826, 0.010767119415860999, 0.00018422042758444397,
|
||||
],
|
||||
position: [
|
||||
229.83617495377155, 41.64140067850747, 119.19293043555355,
|
||||
],
|
||||
focalPoint: [
|
||||
-54.36633106082782, 38.581180913933935, 119.14057149238982,
|
||||
],
|
||||
parallelProjection: true,
|
||||
parallelScale: 204.18618383081306,
|
||||
viewAngle: 90,
|
||||
flipHorizontal: false,
|
||||
flipVertical: false,
|
||||
rotation: 0,
|
||||
},
|
||||
{
|
||||
viewUp: [
|
||||
0.0010457660537213087, -0.9813110828399658, 0.1924252212047577,
|
||||
],
|
||||
viewPlaneNormal: [
|
||||
0.04514460865590469, -0.19218279979693106, -0.9803202210357175,
|
||||
],
|
||||
position: [
|
||||
-21.89042091369629, 36.68157196044922, 65.77458190917969,
|
||||
],
|
||||
focalPoint: [
|
||||
-27.218482971191406, 59.3633918762207, 181.4740447998047,
|
||||
],
|
||||
parallelProjection: true,
|
||||
parallelScale: 81.6656748487095,
|
||||
viewAngle: 90,
|
||||
flipHorizontal: false,
|
||||
flipVertical: false,
|
||||
rotation: 0,
|
||||
},
|
||||
{
|
||||
viewUp: [
|
||||
-0.00001587091537658125, -0.015633516013622284,
|
||||
0.9998778104782104,
|
||||
],
|
||||
viewPlaneNormal: [
|
||||
0.9999420159493561, 0.010767116601264741, 0.00018422603640028001,
|
||||
],
|
||||
position: [238.6157989501953, 43.7907600402832, 106.84664916992188],
|
||||
focalPoint: [
|
||||
-45.586692810058594, 40.73054122924805, 106.7942886352539,
|
||||
],
|
||||
parallelProjection: true,
|
||||
parallelScale: 178.65974529053696,
|
||||
viewAngle: 90,
|
||||
flipHorizontal: false,
|
||||
flipVertical: false,
|
||||
rotation: 0,
|
||||
},
|
||||
],
|
||||
orientations: [null, null, null],
|
||||
volumeSliceIndices: [null, null, null],
|
||||
};
|
||||
|
||||
function pushStacks() {
|
||||
const fnName = "loadAdditionalStack_main_viewer";
|
||||
if (window[fnName] && typeof window[fnName] === "function") {
|
||||
try {
|
||||
state.stacks.forEach((s) => {
|
||||
if (s && Array.isArray(s.i) && s.i.length) {
|
||||
// call the viewer API to load this stack into available stacks
|
||||
window[fnName](s.i);
|
||||
function callWhenReady(fnName, payload) {
|
||||
const maxWait = 5000;
|
||||
const start = Date.now();
|
||||
(function check() {
|
||||
if (window[fnName] && typeof window[fnName] === "function") {
|
||||
try {
|
||||
window[fnName](payload);
|
||||
console.log("imported viewer state via", fnName);
|
||||
} catch (e) {
|
||||
console.error("importViewerState call failed", e);
|
||||
}
|
||||
});
|
||||
console.log(
|
||||
"Requested viewer to load",
|
||||
state.stacks.length,
|
||||
"stacks",
|
||||
);
|
||||
} catch (e) {
|
||||
console.warn("loadAdditionalStack call failed", e);
|
||||
}
|
||||
// Give the viewer 2 seconds to fetch/cache and mount imageIds, then import state
|
||||
setTimeout(() => {
|
||||
callWhenReady("importViewerState_main_viewer", state);
|
||||
}, 2000);
|
||||
return true;
|
||||
return;
|
||||
}
|
||||
if (Date.now() - start > maxWait) {
|
||||
console.warn("Timed out waiting for", fnName);
|
||||
return;
|
||||
}
|
||||
setTimeout(check, 2000);
|
||||
})();
|
||||
}
|
||||
return false;
|
||||
}
|
||||
|
||||
const started = pushStacks();
|
||||
if (!started) {
|
||||
// wait for the viewer API then retry
|
||||
const maxWait = 5000;
|
||||
const start = Date.now();
|
||||
(function waitForApi() {
|
||||
if (pushStacks()) return;
|
||||
if (Date.now() - start > maxWait) {
|
||||
console.warn(
|
||||
"Timed out waiting for loadAdditionalStack API; importing state directly",
|
||||
);
|
||||
callWhenReady("importViewerState_main_viewer", state);
|
||||
return;
|
||||
}
|
||||
setTimeout(waitForApi, 2000);
|
||||
})();
|
||||
}
|
||||
})();
|
||||
});
|
||||
document.addEventListener("DOMContentLoaded", () => {
|
||||
// Ask the viewer to load the stacks first (via exposed API), then wait 2s and import the viewer state.
|
||||
(function loadStacksThenImport() {
|
||||
if (!state.stacks || !Array.isArray(state.stacks)) {
|
||||
callWhenReady("importViewerState_main_viewer", state);
|
||||
return;
|
||||
}
|
||||
|
||||
function pushStacks() {
|
||||
const fnName = "loadAdditionalStack_main_viewer";
|
||||
if (window[fnName] && typeof window[fnName] === "function") {
|
||||
try {
|
||||
state.stacks.forEach((s) => {
|
||||
if (s && Array.isArray(s.i) && s.i.length) {
|
||||
// call the viewer API to load this stack into available stacks
|
||||
window[fnName](s.i);
|
||||
}
|
||||
});
|
||||
console.log(
|
||||
"Requested viewer to load",
|
||||
state.stacks.length,
|
||||
"stacks",
|
||||
);
|
||||
} catch (e) {
|
||||
console.warn("loadAdditionalStack call failed", e);
|
||||
}
|
||||
// Give the viewer 2 seconds to fetch/cache and mount imageIds, then import state
|
||||
setTimeout(() => {
|
||||
callWhenReady("importViewerState_main_viewer", state);
|
||||
}, 2000);
|
||||
return true;
|
||||
}
|
||||
return false;
|
||||
}
|
||||
|
||||
const started = pushStacks();
|
||||
if (!started) {
|
||||
// wait for the viewer API then retry
|
||||
const maxWait = 5000;
|
||||
const start = Date.now();
|
||||
(function waitForApi() {
|
||||
if (pushStacks()) return;
|
||||
if (Date.now() - start > maxWait) {
|
||||
console.warn(
|
||||
"Timed out waiting for loadAdditionalStack API; importing state directly",
|
||||
);
|
||||
callWhenReady("importViewerState_main_viewer", state);
|
||||
return;
|
||||
}
|
||||
setTimeout(waitForApi, 2000);
|
||||
})();
|
||||
}
|
||||
})();
|
||||
});
|
||||
</script>
|
||||
</body>
|
||||
</html>
|
||||
|
||||
Reference in New Issue
Block a user