Add Procedure model integration: create views, forms, and templates; update URLs and search functionality

atlas/admin.py

@@ -15,6 +15,7 @@ from .models import (
     Structure,
     PathologicalProcess,
     Presentation,
+    Procedure,
     UncategorisedDicom,
     SeriesDetail,
     Resource,
@@ -51,6 +52,7 @@ admin.site.register(UncategorisedDicom)
 admin.site.register(SeriesDetail)
 admin.site.register(Resource)
 admin.site.register(CaseDisplaySet)
+admin.site.register(Procedure)
 admin.site.register(UserReportAnswer)
 admin.site.register(CidReportAnswer)
 

atlas/forms.py

@@ -42,6 +42,7 @@ from atlas.models import (
     Subspecialty,
     Presentation,
     PathologicalProcess,
+    Procedure,
     UncategorisedDicom,
     UserReportAnswer,
     CaseDisplaySet,
@@ -395,6 +396,12 @@ class PathologicalProcessForm(ModelForm):
         exclude = []
 
 
+class ProcedureForm(ModelForm):
+    class Meta:
+        model = Procedure
+        exclude = []
+
+
 class SeriesFindingForm(ModelForm):
     class Meta:
         model = SeriesFinding
@@ -617,7 +624,6 @@ class CaseForm(ModelForm):
                 "presentation",
                 "discussion",
                 "report",
-                "procedures",
                 "condition",
                 "pathological_process",
                 "open_access",
@@ -650,7 +656,6 @@ class CaseForm(ModelForm):
             "presentation",
             "discussion",
             "condition",
-            "procedures",
             "pathological_process",
             "report",
             "open_access",
@@ -679,9 +684,6 @@ class CaseForm(ModelForm):
             "subspecialty": CheckboxSelectMultiple(),
             "pathological_process": CheckboxSelectMultiple(),
             "previous_case": CaseSelect(),
-            "procedures": autocomplete.ModelSelect2Multiple(
-                url="atlas:procedure-autocomplete"
-            ),
         }
 
     def clean_cimar_uuid(self):

atlas/tables.py

@@ -15,6 +15,7 @@ from .models import (
     Finding,
     Subspecialty,
     Resource,
+    Procedure,
 )
 
 from django.utils.html import format_html
@@ -395,6 +396,26 @@ class PathologicalProcessTable(SelectionTable):
         sequence = ("name",)
 
 
+class ProcedureTable(SelectionTable):
+    name = tables.Column(
+        linkify=("atlas:procedure_detail", {"pk": tables.A("pk")}),
+        verbose_name="Procedure",
+    )
+
+    edit = tables.LinkColumn(
+        "atlas:procedure_update", text="Edit", args=[A("pk")], orderable=False
+    )
+    delete = tables.LinkColumn(
+        "atlas:procedure_delete", text="Delete", args=[A("pk")], orderable=False
+    )
+
+    class Meta(SelectionTable.Meta):
+        model = Procedure
+        template_name = "django_tables2/bootstrap4.html"
+        fields = ("name",)
+        sequence = ("name",)
+
+
 class SubspecialtyTable(SelectionTable):
     name = tables.Column(
         linkify=("atlas:subspecialty_detail", {"pk": tables.A("pk")}),

atlas/templates/atlas/_categories_search_results.html

@@ -18,6 +18,8 @@
                 <a href="{% url 'atlas:subspecialty_detail' item.pk %}">{{ item.name }}</a>
               {% elif group_name == 'presentations' %}
                 <a href="{% url 'atlas:presentation_detail' item.pk %}">{{ item.name }}</a>
+              {% elif group_name == 'procedures' %}
+                <a href="{% url 'atlas:procedure_detail' item.pk %}">{{ item.name }}</a>
               {% else %}
                 {{ item.name }}
               {% endif %}
@@ -27,7 +29,7 @@
       {% endif %}
     {% endfor %}
 
-    {% if not results.conditions.exists and not results.findings.exists and not results.structures.exists and not results.subspecialties.exists and not results.presentations.exists %}
+    {% if not results.conditions.exists and not results.findings.exists and not results.structures.exists and not results.subspecialties.exists and not results.presentations.exists and not results.procedures.exists %}
       <p class="text-muted">No matches found.</p>
     {% endif %}
   </div>

atlas/templates/atlas/base.html

@@ -90,6 +90,7 @@
                                 <li><a class="dropdown-item" href="{% url 'atlas:subspecialty_view' %}">Subspecialties</a></li>
                                 <li><a class="dropdown-item" href="{% url 'atlas:presentation_view' %}">Presentations</a></li>
                                 <li><a class="dropdown-item" href="{% url 'atlas:pathological_process_view' %}">Pathological process</a></li>
+                                <li><a class="dropdown-item" href="{% url 'atlas:procedure_view' %}">Procedures</a></li>
                                 {% if request.user.is_staff %}
                                     <li><hr class="dropdown-divider"></li>
                                     <li class="dropdown-item-text small text-muted px-3">Create</li>
@@ -99,6 +100,7 @@
                                     <li><a class="dropdown-item" href="{% url 'atlas:subspecialty_create' %}">New subspecialty</a></li>
                                     <li><a class="dropdown-item" href="{% url 'atlas:presentation_create' %}">New presentation</a></li>
                                     <li><a class="dropdown-item" href="{% url 'atlas:pathological_process_create' %}">New pathological process</a></li>
+                                    <li><a class="dropdown-item" href="{% url 'atlas:procedure_create' %}">New procedure</a></li>
                                 {% endif %}
                             </ul>
                         </li>

atlas/templates/atlas/categories_list.html

@@ -10,6 +10,7 @@
         <li><a href="{% url 'atlas:subspecialty_view' %}">Subspecialties</li></a>
         <li><a href="{% url 'atlas:presentation_view' %}">Presentations</li></a>
         <li><a href="{% url 'atlas:pathological_process_view' %}">Pathological Process</li></a>
+        <li><a href="{% url 'atlas:procedure_view' %}">Procedures</a></li>
     </ul>
 
         <div class="mt-4 mb-3">
@@ -94,6 +95,15 @@
                                            hx-indicator="#category-search-loading" />
                                     <label class="form-check-label" for="type-presentations">Presentations</label>
                                 </div>
+                                <div class="form-check">
+                                    <input class="form-check-input" type="checkbox" id="type-procedures" name="types" value="procedures" checked
+                                           hx-get="{% url 'atlas:categories_search_partial' %}"
+                                           hx-target="#category-search-results"
+                                           hx-swap="innerHTML"
+                                           hx-include="#category-search-form"
+                                           hx-indicator="#category-search-loading" />
+                                    <label class="form-check-label" for="type-procedures">Procedures</label>
+                                </div>
                             </div>
                         </div>
                     </div>

atlas/templates/atlas/procedure_form.html

@@ -0,0 +1,23 @@
+{% extends "atlas/base.html" %}
+{% load crispy_forms_tags %}
+
+{% block js %}
+    {{ form.media }}
+{% endblock %}
+
+{% block content %}
+    <h2>Add / Edit Procedure</h2>
+    <p>Use this form to create or edit a procedure.</p>
+    <p>Please check if it already <a href='{% url "atlas:procedure_view" %}'>exists</a> before doing so!</p>
+
+    <form action="" method="post" enctype="multipart/form-data" id="procedure-form">
+        {% csrf_token %}
+        {% crispy form %}
+
+        <div class="mt-3">
+            <button type="submit" class="btn btn-primary">Submit</button>
+            <a class="btn btn-secondary ms-2" href="{% url 'atlas:procedure_view' %}">Cancel</a>
+        </div>
+    </form>
+
+{% endblock %}

atlas/urls.py

@@ -642,7 +642,12 @@ urlpatterns = [
     path(
         "presentation/<int:pk>", views.presentation_detail, name="presentation_detail"
     ),
+    path("procedure/", views.ProcedureView.as_view(), name="procedure_view"),
     path("procedure/<int:pk>", views.procedure_detail, name="procedure_detail"),
+    path("procedure/create", views.ProcedureCreate.as_view(), name="procedure_create"),
+    path("procedure/<int:pk>/update", views.ProcedureUpdate.as_view(), name="procedure_update"),
+    path("procedure/<int:pk>/delete", views.ProcedureDelete.as_view(), name="procedure_delete"),
+    
     path("presentation/create", views.PresentationCreate.as_view(), name="presentation_create"),
     path(
         "process/",

atlas/views.py

@@ -88,6 +88,7 @@ from .forms import (
     SubspecialtyForm,
     PresentationForm,
     PathologicalProcessForm,
+    ProcedureForm,
     UserQuestionAnswerForm,
     UserReportAnswerForm,
 )
@@ -2748,6 +2749,65 @@ class PresentationView(LoginRequiredMixin, UserConfigurablePaginationMixin, Sing
         return ctx
 
 
+class ProcedureView(LoginRequiredMixin, UserConfigurablePaginationMixin, SingleTableMixin, ListView):
+    model = Procedure
+    table_class = __import__('atlas.tables', fromlist=['ProcedureTable']).ProcedureTable
+    template_name = "atlas/view.html"
+
+    def get_context_data(self, **kwargs):
+        ctx = super().get_context_data(**kwargs)
+        try:
+            ctx["create_url"] = reverse(f"atlas:{self.model._meta.model_name}_create")
+        except NoReverseMatch:
+            ctx["create_url"] = None
+        ctx["model_verbose_name"] = getattr(self.model._meta, "verbose_name", None)
+        ctx["model_verbose_name_plural"] = getattr(self.model._meta, "verbose_name_plural", None)
+        return ctx
+
+
+class ProcedureCreate(RevisionMixin, LoginRequiredMixin, CreateView):
+    model = Procedure
+    form_class = ProcedureForm
+    template_name = "atlas/procedure_form.html"
+    def form_valid(self, form):
+        self.object = form.save()
+        return super().form_valid(form)
+
+    def form_invalid(self, form):
+        logger.warning("ProcedureCreate form invalid: %s", form.errors)
+        return super().form_invalid(form)
+
+    def get_success_url(self):
+        try:
+            return reverse("atlas:procedure_detail", kwargs={"pk": self.object.pk})
+        except Exception:
+            return reverse("atlas:procedure_view")
+
+
+class ProcedureUpdate(RevisionMixin, LoginRequiredMixin, UpdateView):
+    model = Procedure
+    form_class = ProcedureForm
+    template_name = "atlas/procedure_form.html"
+    def form_valid(self, form):
+        self.object = form.save()
+        return super().form_valid(form)
+
+    def form_invalid(self, form):
+        logger.warning("ProcedureUpdate form invalid: %s", form.errors)
+        return super().form_invalid(form)
+
+    def get_success_url(self):
+        try:
+            return reverse("atlas:procedure_detail", kwargs={"pk": self.object.pk})
+        except Exception:
+            return reverse("atlas:procedure_view")
+
+
+class ProcedureDelete(RevisionMixin, LoginRequiredMixin, DeleteView):
+    model = Procedure
+    template_name = "confirm_delete.html"
+
+
 class PathologicalProcessView(LoginRequiredMixin, UserConfigurablePaginationMixin, SingleTableMixin, FilterView):
     model = PathologicalProcess
     table_class = PathologicalProcessTable
@@ -3137,7 +3197,7 @@ def categories_list(request):
 
     results = None
     if query:
-        from .models import Condition, Finding, Structure, Subspecialty, Presentation
+        from .models import Condition, Finding, Structure, Subspecialty, Presentation, Procedure
 
         # Helper to conditionally populate each result list only when the
         # corresponding type is requested (or when no types filter provided).
@@ -3150,6 +3210,7 @@ def categories_list(request):
             "structures": Structure.objects.filter(name__icontains=query).order_by("name") if include("structures") else (),
             "subspecialties": Subspecialty.objects.filter(name__icontains=query).order_by("name") if include("subspecialties") else (),
             "presentations": Presentation.objects.filter(name__icontains=query).order_by("name") if include("presentations") else (),
+            "procedures": Procedure.objects.filter(name__icontains=query).order_by("name") if include("procedures") else (),
         }
 
     return render(request, "atlas/categories_list.html", {"query": query, "results": results})
@@ -3163,9 +3224,9 @@ def categories_search_partial(request):
     """
     query = request.GET.get("q", "").strip()
     types = request.GET.getlist("types")
-    results = {"conditions": (), "findings": (), "structures": (), "subspecialties": (), "presentations": ()}
+    results = {"conditions": (), "findings": (), "structures": (), "subspecialties": (), "presentations": (), "procedures": ()}
     if query:
-        from .models import Condition, Finding, Structure, Subspecialty, Presentation
+        from .models import Condition, Finding, Structure, Subspecialty, Presentation, Procedure
 
         def include(name: str) -> bool:
             return not types or name in types
@@ -3176,6 +3237,7 @@ def categories_search_partial(request):
             "structures": Structure.objects.filter(name__icontains=query).order_by("name") if include("structures") else (),
             "subspecialties": Subspecialty.objects.filter(name__icontains=query).order_by("name") if include("subspecialties") else (),
             "presentations": Presentation.objects.filter(name__icontains=query).order_by("name") if include("presentations") else (),
+            "procedures": Procedure.objects.filter(name__icontains=query).order_by("name") if include("procedures") else (),
         }
 
     return render(request, "atlas/_categories_search_results.html", {"query": query, "results": results})