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lots of improvements

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This commit is contained in:
Ross
2025-07-14 13:26:11 +01:00
parent ec97fa0c71
commit 5187885c3b
14 changed files with 536 additions and 71 deletions
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atlas/admin.py
+3 -1
View File
@@ -16,7 +16,8 @@ from .models import (
Presentation,
UncategorisedDicom,
SeriesDetail,
Resource
Resource,
CaseDisplaySet,
)
from django.forms import ModelForm
@@ -46,6 +47,7 @@ admin.site.register(CaseDetail)
admin.site.register(UncategorisedDicom)
admin.site.register(SeriesDetail)
admin.site.register(Resource)
admin.site.register(CaseDisplaySet)
class DifferentialInline(admin.TabularInline):
atlas/forms.py
+29
View File
@@ -40,6 +40,7 @@ from atlas.models import (
Subspecialty,
UncategorisedDicom,
UserReportAnswer,
CaseDisplaySet,
)
from anatomy.models import Modality
@@ -964,3 +965,31 @@ SeriesFormSet = inlineformset_factory(
extra=1,
can_delete=True,
)
class CaseDisplaySetForm(forms.ModelForm):
class Meta:
model = CaseDisplaySet
fields = [
"name",
"description",
"findings",
"structures",
"conditions",
]
widgets = {
"name": forms.TextInput(attrs={"class": "form-control", "placeholder": "Display Set Name"}),
"description": forms.Textarea(attrs={"class": "form-control", "rows": 3, "placeholder": "Description"}),
"findings": autocomplete.ModelSelect2Multiple(
url="atlas:finding-autocomplete"
),
"structures": autocomplete.ModelSelect2Multiple(
url="atlas:structure-autocomplete"
),
"conditions": autocomplete.ModelSelect2Multiple(
url="atlas:condition-autocomplete"
),
}
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
# Optionally, you can filter queryset for findings/structures/conditions here if needed
atlas/migrations/0073_casedisplayset_conditions_casedisplayset_findings_and_more.py
+34
View File
@@ -0,0 +1,34 @@
# Generated by Django 5.1.4 on 2025-07-14 09:41
import django.db.models.deletion
from django.db import migrations, models
class Migration(migrations.Migration):
dependencies = [
('atlas', '0072_casedisplayset'),
]
operations = [
migrations.AddField(
model_name='casedisplayset',
name='conditions',
field=models.ManyToManyField(blank=True, to='atlas.condition'),
),
migrations.AddField(
model_name='casedisplayset',
name='findings',
field=models.ManyToManyField(blank=True, to='atlas.finding'),
),
migrations.AddField(
model_name='casedisplayset',
name='structures',
field=models.ManyToManyField(blank=True, to='atlas.structure'),
),
migrations.AlterField(
model_name='casedisplayset',
name='case',
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='display_sets', to='atlas.case'),
),
]
atlas/models.py
+10 -1
View File
@@ -1119,7 +1119,12 @@ class SeriesDetail(models.Model):
ordering = ("sort_order",)
class CaseDisplaySet(models.Model, AuthorMixin):
case = models.ForeignKey(Case, on_delete=models.CASCADE)
"""
This is analogous to a SeriesFinding but for a Case (it has
access to all the series stacks).
"""
case = models.ForeignKey(Case, on_delete=models.CASCADE, related_name="display_sets")
name = models.CharField(
max_length=255,
@@ -1143,6 +1148,10 @@ class CaseDisplaySet(models.Model, AuthorMixin):
help_text="Annotations for the display set",
)
findings = models.ManyToManyField(Finding, blank=True)
structures = models.ManyToManyField(Structure, blank=True)
conditions = models.ManyToManyField(Condition, blank=True)
class CaseDetail(models.Model):
atlas/templates/atlas/case_display_block.html
+97 -3
View File
@@ -118,6 +118,16 @@
ID: {{ case.id }}
</div>
<details id="dicom-viewer-details">
<summary>Viewer</summary>
<div id="main_viewer" class="dicom-viewer-root"
style="box-sizing: border-box; background: #222; width: 100%; height: 600px;"
data-auto-cache-stack="false"
data-images='{{case.get_series_images_nested}}'
></div>
</details>
<p class="pre-whitespace"><b>Description:</b> {{ case.description }}</p>
<p>
@@ -227,8 +237,10 @@
</details>
{% endif %}
<!-- Series Findings -->
<h5>Series Findings</h5>
{% if case.series.all %}
{% for detail in case.get_ordered_series %}
{% for series in case.get_ordered_series %}
{% for finding in series.findings.all %}
<div class="finding-box" id="finding-box-{{ finding.pk }}" data-series="{{ series.pk }}"
_="on mouseenter
@@ -237,7 +249,9 @@
until mouseleave"
>
<span>
<a href="{{series.get_absolute_url}}?show_finding={{finding.pk}}"><button class="btn btn-primary btn-sm">View</button></a>
<a href="{{series.get_absolute_url}}?show_finding={{finding.pk}}">
<button class="btn btn-primary btn-sm">View</button>
</a>
<button class="btn btn-secondary btn-sm view-finding-modal" data-finding-id="{{ finding.pk }}" data-series-id="{{ series.pk }}">
View in Modal
</button>
@@ -274,6 +288,75 @@
{% else %}
No series associated with case.
{% endif %}
<!-- Case Display Sets -->
<h5 class="mt-3">Case Display Sets</h5>
{% if case.display_sets %}
<ul class="list-group">
{% for ds in case.display_sets.all %}
<li class="list-group-item">
<b>Name: {{ ds.name }}</b>
{% if ds.description %}
<span class="text-muted">({{ ds.description }})</span>
{% endif %}
<span>
<a href="{% url 'atlas:case_displaysets_detail' ds.pk %}">View Display Set</a>
</span>
<div>
<strong>Findings:</strong>
{% if ds.findings.all %}
<ul>
{% for finding in ds.findings.all %}
<li>{{ finding }}</li>
{% endfor %}
</ul>
{% else %}
<span class="text-muted">None</span>
{% endif %}
</div>
<div>
<strong>Structures:</strong>
{% if ds.structures.all %}
<ul>
{% for structure in ds.structures.all %}
<li>{{ structure }}</li>
{% endfor %}
</ul>
{% else %}
<span class="text-muted">None</span>
{% endif %}
</div>
<div>
<strong>Conditions:</strong>
{% if ds.conditions.all %}
<ul>
{% for condition in ds.conditions.all %}
<li>{{ condition }}</li>
{% endfor %}
</ul>
{% else %}
<span class="text-muted">None</span>
{% endif %}
</div>
<div>
<details>
<summary class="small text-muted" style="cursor:pointer;">Show advanced (viewer state & annotations)</summary>
<div>
<strong>Viewer State:</strong>
<pre class="small">{{ ds.viewerstate|default:"{}" }}</pre>
</div>
<div>
<strong>Annotations:</strong>
<pre class="small">{{ ds.annotations|default:"{}" }}</pre>
</div>
</details>
</div>
</li>
{% endfor %}
</ul>
{% else %}
<span class="text-muted">No display sets for this case.</span>
{% endif %}
</details>
</div>
<div>
@@ -439,7 +522,18 @@
}
document.addEventListener("DOMContentLoaded", function () {
// Move up/down logic
const dicomDetails = document.getElementById("dicom-viewer-details");
let dicomViewerLoaded = false;
dicomDetails.addEventListener("toggle", function() {
if (!dicomViewerLoaded && dicomDetails.open) {
window.mountDicomViewers();
dicomViewerLoaded = true;
}
});
// Move up/down logic
document.querySelectorAll("#series-reorder-list .move-up, #series-reorder-list .move-down").forEach(function(btn) {
btn.addEventListener("click", function(e) {
e.preventDefault();
atlas/templates/atlas/case_displaysets.html
Executable
+72
View File
@@ -0,0 +1,72 @@
{% extends 'atlas/base.html' %}
{% block content %}
{% include 'atlas/question_link_header.html' %}
<h2>Display Sets: {{ case.title }}</h2>
<details class="help-text">
<summary><i class="bi bi-info-circle"></i> Help</summary>
<p>This page shows the display sets associated with the case.</p>
<p>If you have access you can add and edit display sets.</p>
</details>
<div id="main_viewer" class="dicom-viewer-root"
style="box-sizing: border-box; background: #222; width: 100%; height: 600px;"
data-auto-cache-stack="false"
data-images='{{case.get_series_images_nested}}'
></div>
<div class="mb-3">
<button hx-get="{% url 'atlas:case_displaysets_add' case.pk %}" hx-target="#displayset-add-form" hx-swap="innerHTML">Add Display Set</button>
<div id="displayset-add-form"></div>
</div>
<ul class="list-group mb-4" id="display-set-list">
{% for ds in case.display_sets.all %}
<li class="list-group-item" id="displayset-{{ ds.pk }}">
{% include 'atlas/partials/displayset_row.html' %}
</li>
{% empty %}
<li class="list-group-item text-muted">No display sets for this case.</li>
{% endfor %}
</ul>
{% endblock %}
{% block js %}
<script>
document.addEventListener("DOMContentLoaded", function () {
window.mountDicomViewers();
{% if selected_displayset %}
setTimeout(function() {
importAnnotations_main_viewer({{ selected_displayset.annotations|safe }});
importViewerState_main_viewer({{ selected_displayset.viewerstate|safe }});
}, 500);
{% endif %}
});
document.addEventListener("htmx:beforeRequest", function(evt) {
console.log("htmx:beforeRequest", evt.detail);
// Only for the display set add form
var form = evt.target;
console.log("Form:", form);
console.log("Form matches:", form.matches("form[hx-post*='{% url 'atlas:case_displaysets_add' case.pk %}']"));
if (form && form.matches("form[hx-post*='{% url 'atlas:case_displaysets_add' case.pk %}']")) {
// Set hidden fields from JS functions
var viewerState = window.exportViewerState_main_viewer ? window.exportViewerState_main_viewer() : "{}";
var annotations = window.exportAnnotations_main_viewer ? window.exportAnnotations_main_viewer() : "{}";
evt.detail.requestConfig.parameters["annotations"] = annotations;
evt.detail.requestConfig.parameters["viewerstate"] = viewerState;
console.log(evt)
}
});
</script>
{% endblock %}
atlas/templates/atlas/collection_case_display_setup.html
+2 -2
View File
@@ -29,7 +29,7 @@ document.getElementById('save-viewerstate').addEventListener('click', function()
document.getElementById('viewerstate-save-response').innerHTML = "<span class='text-danger'>Viewer state could not be retrieved.</span>";
return;
}
fetch("{% url 'atlas:collection_case_display_setup' case_detail.collection.pk case_detail.case.pk %}", {
fetch("{% url 'atlas:collection_case_displaysetup' case_detail.collection.pk case_detail.case.pk %}", {
method: "POST",
headers: {
"Content-Type": "application/json",
@@ -46,7 +46,7 @@ document.getElementById('save-viewerstate').addEventListener('click', function()
});
});
document.getElementById('reset-viewerstate').addEventListener('click', function() {
fetch("{% url 'atlas:collection_case_display_setup' case_detail.collection.pk case_detail.case.pk %}", {
fetch("{% url 'atlas:collection_case_displaysetup' case_detail.collection.pk case_detail.case.pk %}", {
method: "POST",
headers: {
"Content-Type": "application/json",
atlas/templates/atlas/collection_detail.html
+1 -1
View File
@@ -18,7 +18,7 @@
<li data-question_pk={{casedetail.case.pk}}><a title="sort_order: {{casedetail.sort_order}}" href="{% url 'atlas:collection_case_view' pk=collection.pk case_number=forloop.counter0 %}">Case {{forloop.counter}}</a>
: {{casedetail.case.title}}
(<a href="{% url 'atlas:collection_case_display_setup' casedetail.collection.pk casedetail.case.pk %}">setup default display</a>
(<a href="{% url 'atlas:collection_case_displaysetup' casedetail.collection.pk casedetail.case.pk %}">setup default display</a>
{% if casedetail.default_viewerstate %}
<i class="bi bi-check text-success" title="This case has a default viewerstate defined"></i>
{% endif %}
atlas/templates/atlas/partials/displayset_form.html
+19
View File
@@ -0,0 +1,19 @@
<form
hx-post="{% if form.instance.pk %}{% url 'atlas:case_displaysets_edit' form.instance.pk %}{% else %}{% url 'atlas:case_displaysets_add' case.pk %}{% endif %}"
{% if form.instance.pk %}
hx-swap="outerHTML"
hx-target="closest li"
{% else %}
hx-target="#display-set-list"
hx-swap="beforeend"
hx-on::after-request= "this.remove()"
{% endif %}
>
{% csrf_token %}
{{ form.as_p }}
{{ form.media }}
<input type="hidden" name="viewerstate" id="viewerstate-input">
<input type="hidden" name="annotations" id="annotations-input">
<button type="submit">Save</button>
</form>
atlas/templates/atlas/partials/displayset_row.html
+84
View File
@@ -0,0 +1,84 @@
<li class="list-group-item d-flex align-items-start" id="displayset-{{ ds.pk }}">
<div class="me-3">
{% if ds.viewerstate and ds.annotations %}
<button
type="button"
class="btn btn-primary btn-lg"
style="min-width: 100px;"
onclick='importAnnotations_main_viewer({{ ds.annotations|safe }}); importViewerState_main_viewer({{ ds.viewerstate|safe }});'
>Load</button>
{% endif %}
</div>
<div class="flex-grow-1">
<b>{{ ds.name }}</b>
{% if ds.description %}
<span class="text-muted">({{ ds.description }})</span>
{% endif %}
<div class="mt-2">
<strong>Findings:</strong>
{% if ds.findings.all %}
<ul>
{% for finding in ds.findings.all %}
<li>{{ finding }}</li>
{% endfor %}
</ul>
{% else %}
<span class="text-muted">None</span>
{% endif %}
</div>
<div>
<strong>Structures:</strong>
{% if ds.structures.all %}
<ul>
{% for structure in ds.structures.all %}
<li>{{ structure }}</li>
{% endfor %}
</ul>
{% else %}
<span class="text-muted">None</span>
{% endif %}
</div>
<div>
<strong>Conditions:</strong>
{% if ds.conditions.all %}
<ul>
{% for condition in ds.conditions.all %}
<li>{{ condition }}</li>
{% endfor %}
</ul>
{% else %}
<span class="text-muted">None</span>
{% endif %}
</div>
<div>
<details>
<summary class="small text-muted" style="cursor:pointer;">Show advanced (viewer state & annotations)</summary>
<div>
<strong>Viewer State:</strong>
<pre class="small">{{ ds.viewerstate|default:"{}" }}</pre>
</div>
<div>
<strong>Annotations:</strong>
<pre class="small">{{ ds.annotations|default:"{}" }}</pre>
</div>
</details>
</div>
<div class="mt-2">
<button
hx-get="{% url 'atlas:case_displaysets_edit' ds.pk %}"
hx-target="#displayset-edit-form-{{ ds.pk }}"
hx-swap="innerHTML"
class="btn btn-warning btn-sm"
>Edit</button>
<button
hx-delete="{% url 'atlas:case_displaysets_delete' ds.pk %}"
hx-target="closest li"
hx-swap="outerHTML"
class="btn btn-danger btn-sm"
onclick="return confirm('Are you sure you want to delete this display set?');"
>Delete</button>
</div>
</div>
<div id="displayset-edit-form-{{ ds.pk }}"></div>
</li>
atlas/templates/atlas/question_link_header.html
+1
View File
@@ -2,6 +2,7 @@
<a href="{% url 'atlas:case_detail' pk=case.pk %}" title="View the Case">View</a>
<a href="{% url 'atlas:case_update' pk=case.pk %}" title="Edit the Case">Edit</a>
<a href="{% url 'atlas:case_series_update' pk=case.pk %}" title="Edit the Cases Series">Series</a>
<a href="{% url 'atlas:case_displaysets' pk=case.pk %}" title="View and edit case display sets">Display Sets</a>
<a href="{% url 'atlas:case_clone' pk=case.pk %}"
title="Clone the Case (duplicate everything but the images)">Clone</a>
<a href="{% url 'atlas:case_delete' pk=case.pk %}" title="Delete the Case">Delete</a>
atlas/urls.py
+7 -2
View File
@@ -221,8 +221,8 @@ urlpatterns = [
),
path(
"collection/<int:collection_id>/<int:case_id>/display_setup",
views.collection_case_display_setup,
name="collection_case_display_setup",
views.collection_case_displaysetup,
name="collection_case_displaysetup",
),
path(
"collection/<int:pk>/<int:case_number>/take/<int:cid>/<str:passcode>",
@@ -250,6 +250,11 @@ urlpatterns = [
name="collection_dicom_json",
),
path("case/<int:pk>/authors", views.CaseAuthorUpdate.as_view(), name="case_authors"),
path("case/<int:pk>/display_sets", views.case_displaysets, name="case_displaysets"),
path("case/<int:pk>/display_sets/add", views.case_displaysets_add, name="case_displaysets_add"),
path("<int:pk>/display_sets/edit", views.case_displaysets_edit, name="case_displaysets_edit"),
path("<int:pk>/display_sets/detail", views.case_displaysets_detail, name="case_displaysets_detail"),
path("<int:pk>/display_sets/delete", views.case_displaysets_delete, name="case_displaysets_delete"),
path(
"case/<int:pk>/dicom_json",
views.case_dicom_json,
atlas/views.py
+134 -18
View File
@@ -9,6 +9,8 @@ from django.shortcuts import render, get_object_or_404, redirect
from django import forms
from django.utils import timezone
from django.views.decorators.http import require_POST
from django.views.decorators.http import require_http_methods
from django.template.loader import render_to_string
# from django.contrib.auth.models import User
from django.contrib.auth.decorators import login_required, user_passes_test
@@ -47,6 +49,7 @@ from .forms import (
CaseCollectionCaseFormSet,
CaseCollectionForm,
CaseDetailForm,
CaseDisplaySetForm,
CaseForm,
CaseResourceFormSet,
CaseUpdateSeriesForm,
@@ -77,7 +80,9 @@ from .models import (
Case,
CaseCollection,
CaseDetail,
CaseDisplaySet,
CasePrior,
CaseResource,
CidReportAnswer,
Condition,
Differential,
@@ -196,6 +201,102 @@ class AtlasEditorRequiredMixin(object):
return obj
raise PermissionDenied("You must be an atlas editor to do this.") # or Http404
@login_required
@user_has_case_view_access
def case_displaysets(request, pk):
case = get_object_or_404(Case, pk=pk)
can_edit = case.check_user_can_edit(request.user)
# Get displayset id from GET parameter
displayset_id = request.GET.get("displayset")
selected_displayset = None
if displayset_id:
try:
selected_displayset = case.display_sets.get(pk=displayset_id)
except CaseDisplaySet.DoesNotExist:
selected_displayset = None
return render(
request,
"atlas/case_displaysets.html",
{
"case": case,
"can_edit": can_edit,
"selected_displayset": selected_displayset,
},
)
@login_required
@user_has_case_view_access
@require_http_methods(["GET", "POST"])
def case_displaysets_add(request, pk):
case = get_object_or_404(Case, pk=pk)
form = CaseDisplaySetForm(request.POST or None)
if request.method == "POST":
if form.is_valid():
ds = form.save(commit=False)
ds.case = case
ds.author = request.user
ds.viewerstate = request.POST.get("viewerstate") or None
ds.annotations = request.POST.get("annotations") or None
ds.save()
form.save_m2m()
# HTMX: return the new display set row HTML fragment
html = render_to_string("atlas/partials/displayset_row.html", {"ds": ds, "can_edit": True})
return HttpResponse(html)
else:
# HTMX: return the form HTML fragment with errors
html = render_to_string("atlas/partials/displayset_form.html", {"form": form, "case": case}, request=request)
return HttpResponse(html, status=400)
else:
# HTMX: return the blank form HTML fragment
html = render_to_string("atlas/partials/displayset_form.html", {"form": form, "case": case}, request=request)
return HttpResponse(html)
@login_required
@require_http_methods(["GET", "POST"])
def case_displaysets_edit(request, pk):
ds = get_object_or_404(CaseDisplaySet, pk=pk)
case = ds.case
if not case.check_user_can_edit(request.user):
return HttpResponse("You do not have permission to delete this display set.")
form = CaseDisplaySetForm(request.POST or None, instance=ds)
if request.method == "POST":
if form.is_valid():
ds = form.save(commit=False)
ds.viewerstate = request.POST.get("viewerstate") or ds.viewerstate
ds.annotations = request.POST.get("annotations") or ds.annotations
ds.save()
form.save_m2m()
# Return updated row HTML
html = render_to_string("atlas/partials/displayset_row.html", {"ds": ds, "can_edit": True}, request=request)
return HttpResponse(html)
else:
html = render_to_string("atlas/partials/displayset_form.html", {"form": form, "case": case}, request=request)
return HttpResponse(html, status=400)
else:
html = render_to_string("atlas/partials/displayset_form.html", {"form": form, "case": case}, request=request)
return HttpResponse(html)
@require_http_methods(["GET", "POST"])
def case_displaysets_detail(request, pk):
displayset = get_object_or_404(CaseDisplaySet, pk=pk)
case = displayset.case
# Redirect to the case_displaysets page with ?displayset=<pk>
return redirect(f"{reverse('atlas:case_displaysets', args=[case.pk])}?displayset={pk}")
def case_displaysets_delete(request, pk):
try:
displayset = CaseDisplaySet.objects.get(pk=pk)
except CaseDisplaySet.DoesNotExist:
raise Http404("Display set not found.")
if not displayset.case.check_user_can_edit(request.user):
raise PermissionDenied("You do not have permission to delete this display set.")
displayset.delete()
return HttpResponse("<li class='list-group-item' >Display set deleted successfully.")
@login_required
@user_has_case_view_access
@@ -205,25 +306,40 @@ def case_detail(request, pk):
Case.objects
.select_related() # Add any FK fields if needed
.prefetch_related(
"series__examination",
"series__plane",
"series__contrast",
"series__images",
"series__findings__findings",
"series__findings__conditions",
"series__findings__structures",
"subspecialty",
"condition",
"presentation",
"pathological_process",
#"differential",
"caseresource_set",
"author",
"casecollection_set",
Prefetch(
"seriesdetail_set",
queryset=SeriesDetail.objects.select_related("series").order_by("sort_order").prefetch_related(
Prefetch(
"series",
queryset=Series.objects.select_related("modality", "examination", "plane", "contrast")
.prefetch_related(
Prefetch("images", queryset=SeriesImage.objects.filter(removed=False).order_by("position")),
Prefetch(
"findings",
queryset=SeriesFinding.objects.prefetch_related(
Prefetch("findings", queryset=Finding.objects.all()),
Prefetch("conditions", queryset=Condition.objects.all()),
Prefetch("structures", queryset=Structure.objects.all()),
)
),
)
),
),
),
Prefetch("subspecialty", queryset=Subspecialty.objects.all()),
Prefetch("condition", queryset=Condition.objects.all()),
Prefetch("presentation", queryset=Presentation.objects.all()),
Prefetch("pathological_process", queryset=PathologicalProcess.objects.all()),
Prefetch("caseresource_set", queryset=CaseResource.objects.all()),
Prefetch("casecollection_set", queryset=CaseCollection.objects.all()),
Prefetch("display_sets", queryset=CaseDisplaySet.objects.prefetch_related(
Prefetch("findings", queryset=Finding.objects.all()),
Prefetch("structures", queryset=Structure.objects.all()),
Prefetch("conditions", queryset=Condition.objects.all()),
)),
)
.get(pk=pk)
)
can_edit = case.check_user_can_edit(request.user)
return render(
@@ -3349,7 +3465,7 @@ def series_bulk_delete(request):
@user_is_collection_author_or_atlas_editor
@csrf_exempt # Only if you have CSRF issues; otherwise, keep CSRF protection
def collection_case_display_setup(request, collection_id, case_id):
def collection_case_displaysetup(request, collection_id, case_id):
"""
View to set up the display options for a specific case in a collection.
This can include setting which series to display, annotations, etc.
@@ -3370,6 +3486,6 @@ def collection_case_display_setup(request, collection_id, case_id):
else:
return HttpResponse("<span class='text-danger'>No viewer state provided.</span>", status=400)
return render(request, "atlas/collection_case_display_setup.html", {
return render(request, "atlas/collection_case_displaysetup.html", {
"case_detail": case_detail
})
rad/static/dv3d/index.js
+41 -41
View File
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