start anatomy creation forms

anatomy/admin.py

@@ -7,6 +7,7 @@ from .models import (
     CidUserAnswer,
     Exam,
     Modality,
+    Region,
     BodyPart,
     Structure,
 )
@@ -42,6 +43,8 @@ class AnatomyAdmin(VersionAdmin):
         ExamInline,
     ]
 
+    exclude = [ "image_annotations" ]
+
 
 admin.site.register(AnatomyQuestion, AnatomyAdmin)
 admin.site.register(Examination)
@@ -49,6 +52,7 @@ admin.site.register(QuestionType)
 admin.site.register(CidUserAnswer)
 admin.site.register(Exam)
 admin.site.register(Modality)
+admin.site.register(Region)
 admin.site.register(BodyPart)
 admin.site.register(Structure)
 

anatomy/forms.py

@@ -1,16 +1,109 @@
-from django import forms
+from django.forms import (
+    Form,
+    ModelForm,
+    ModelMultipleChoiceField,
+    ModelChoiceField,
+    ChoiceField,
+    CharField,
+)
+from django.forms import inlineformset_factory
 
-from .models import CidUserAnswer, AnatomyQuestion
+from .models import (
+    Answer,
+    CidUserAnswer,
+    AnatomyQuestion,
+    Examination,
+    BodyPart,
+    Structure,
+    Region,
+    Modality,
+    QuestionType,
+)
+
+from django.contrib.admin.widgets import FilteredSelectMultiple
+from django.forms.widgets import RadioSelect, TextInput
 
 
-class AnatomyAnswerForm(forms.ModelForm):
+class AnatomyAnswerForm(ModelForm):
     class Meta:
         model = CidUserAnswer
         fields = ("answer",)
 
 
-class MarkAnatomyQuestionForm(forms.Form):
+class MarkAnatomyQuestionForm(Form):
     # correct = forms.CharField(required=False)
     # half_correct = forms.CharField(required=False)
     # incorrect = forms.CharField(required=False)
-    marked_answers = forms.CharField(required=False)
+    marked_answers = CharField(required=False)
+
+
+class AnatomyQuestionForm(ModelForm):
+    class Media:
+        # Django also includes a few javascript files necessary
+        # for the operation of this form element. You need to
+        # include <script src="/admin/jsi18n"></script>
+        # in the template.
+        css = {
+            "all": ["css/widgets.css"],
+        }
+        # Adding this javascript is crucial
+        js = ["jsi18n.js", "tesseract.min.js"]
+
+    def __init__(self, *args, **kwargs):
+        super(AnatomyQuestionForm, self).__init__(*args, **kwargs)
+        # self.fields['question'].widget.attrs = {'class': 'question-form', 'rows': 10, 'cols': 100}
+        # self.fields['feedback'].widget.attrs = {'class': 'feedback-form', 'rows': 10, 'cols': 100}
+        self.fields["question_type"] = ModelChoiceField(
+            required=True,
+            queryset=QuestionType.objects.all(),
+            initial=1,
+        )
+
+        self.fields["region"] = ModelChoiceField(
+            required=False,
+            queryset=Region.objects.all(),
+        )
+
+        self.fields["modality"] = ModelChoiceField(
+            required=True,
+            queryset=Modality.objects.all(),
+        )
+
+        self.fields["structure"] = ModelChoiceField(
+            required=False,
+            queryset=Structure.objects.all(),
+        )
+
+        self.fields["examination"] = ModelChoiceField(
+            required=False,
+            queryset=Examination.objects.all(),
+        )
+
+        self.fields["body_part"] = ModelChoiceField(
+            required=False,
+            queryset=BodyPart.objects.all(),
+        )
+
+    class Meta:
+        model = AnatomyQuestion
+
+        fields = ["question_type", "image", "description"]
+
+        widgets = {}
+
+
+AnswerFormSet = inlineformset_factory(
+    AnatomyQuestion,
+    Answer,
+    fields=["answer", "status"],
+    widgets={
+        "answer": TextInput(
+            attrs={"required": "true", "minlength": 2, "maxlength": 500}
+        )
+    },
+    exclude=[],
+    can_delete=True,
+    extra=1,
+    max_num=10,
+    field_classes="testing",
+)

anatomy/migrations/0010_auto_20201206_1716.py

@@ -0,0 +1,26 @@
+# Generated by Django 3.1.3 on 2020-12-06 17:16
+
+from django.db import migrations, models
+import django.db.models.deletion
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ('anatomy', '0009_anatomyquestion_image_annotations'),
+    ]
+
+    operations = [
+        migrations.CreateModel(
+            name='Region',
+            fields=[
+                ('id', models.AutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
+                ('region', models.CharField(max_length=200)),
+            ],
+        ),
+        migrations.AddField(
+            model_name='anatomyquestion',
+            name='region',
+            field=models.ForeignKey(blank=True, help_text='Region the image covers', null=True, on_delete=django.db.models.deletion.SET_NULL, to='anatomy.region'),
+        ),
+    ]

anatomy/migrations/0011_anatomyquestion_author.py

@@ -0,0 +1,20 @@
+# Generated by Django 3.1.3 on 2020-12-06 18:12
+
+from django.conf import settings
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        migrations.swappable_dependency(settings.AUTH_USER_MODEL),
+        ('anatomy', '0010_auto_20201206_1716'),
+    ]
+
+    operations = [
+        migrations.AddField(
+            model_name='anatomyquestion',
+            name='author',
+            field=models.ManyToManyField(blank=True, help_text='Author(s) of question', related_name='anatomy_authored_questions', to=settings.AUTH_USER_MODEL),
+        ),
+    ]

anatomy/models.py

@@ -45,6 +45,13 @@ class Structure(models.Model):
         return self.structure
 
 
+class Region(models.Model):
+    region = models.CharField(max_length=200)
+
+    def __str__(self):
+        return self.region
+
+
 class Modality(models.Model):
     modality = models.CharField(max_length=200)
 
@@ -63,46 +70,62 @@ class AnatomyQuestion(models.Model):
     # author = models.ForeignKey('auth.User', on_delete=models.CASCADE)
     # image = models.ImageField()
     # feedback = models.TextField(null=True)
-    question_type = models.ForeignKey(QuestionType,
+    question_type = models.ForeignKey(
-                                      on_delete=models.SET_NULL,
+        QuestionType, on_delete=models.SET_NULL, null=True
-                                      null=True)
+    )
 
-    image = models.ImageField(upload_to=image_directory_path,
+    image = models.ImageField(upload_to=image_directory_path, storage=image_storage)
-                              storage=image_storage)
 
-    image_annotations = models.TextField(blank=True, help_text="Stores a JSON representation of annotations to be applied by cornerstonetools")
+    image_annotations = models.TextField(
+        blank=True,
+        help_text="Stores a JSON representation of annotations to be applied by cornerstonetools",
+    )
 
     description = models.CharField(
         max_length=400,
-        help_text=
+        help_text="Short description of the image e.g. 'Sagittal CT Chest, Abdomen & Pelvis', will be displayed as the title.",
-        "Short description of the image e.g. 'Sagittal CT Chest, Abdomen & Pelvis', will be displayed as the title."
     )
 
-    examination = models.ForeignKey(Examination,
+    examination = models.ForeignKey(
-                                    on_delete=models.SET_NULL,
+        Examination, on_delete=models.SET_NULL, null=True, blank=True
-                                    null=True,
+    )
-                                    blank=True)
+    modality = models.ForeignKey(
-    modality = models.ForeignKey(Modality,
+        Modality,
-                                 on_delete=models.SET_NULL,
+        on_delete=models.SET_NULL,
-                                 null=True,
+        null=True,
-                                 help_text="Modality of the image")
+        help_text="Modality of the image",
-    body_part = models.ForeignKey(BodyPart,
+    )
-                                  on_delete=models.SET_NULL,
+    region = models.ForeignKey(
-                                  null=True,
+        Region,
-                                  blank=True)
+        on_delete=models.SET_NULL,
-    structure = models.ForeignKey(Structure,
+        null=True,
-                                  on_delete=models.SET_NULL,
+        blank=True,
-                                  null=True,
+        help_text="Region the image covers",
-                                  blank=True)
+    )
+    body_part = models.ForeignKey(
+        BodyPart, on_delete=models.SET_NULL, null=True, blank=True
+    )
+    structure = models.ForeignKey(
+        Structure, on_delete=models.SET_NULL, null=True, blank=True
+    )
     created_date = models.DateTimeField(default=timezone.now)
-    
+
-    open_access = models.BooleanField(help_text="If an question should be freely available to browse",
+    open_access = models.BooleanField(
-                                 default=True)
+        help_text="If an question should be freely available to browse", default=True
+    )
+
+    author = models.ManyToManyField(
+        settings.AUTH_USER_MODEL,
+        blank=True,
+        help_text="Author(s) of question",
+        related_name="anatomy_authored_questions",
+    )
 
     def __str__(self):
         # Get first answer
-        return "{} [{}, {}]".format(self.GetPrimaryAnswer(), self.modality,
+        return "{} [{}, {}]".format(
-                                             self.structure)
+            self.GetPrimaryAnswer(), self.modality, self.structure
+        )
         # Get associated exams
         e = self.exams.all().values_list("name", flat=True)
         exams = ", ".join(e)
@@ -110,18 +133,24 @@ class AnatomyQuestion(models.Model):
         if a is None:
             return "({})".format(exams)
         else:
-            return "{} ({}) [{}, {}]".format(a.answer, exams, self.modality,
+            return "{} ({}) [{}, {}]".format(
-                                             self.structure)
+                a.answer, exams, self.modality, self.structure
+            )
+
+    def get_absolute_url(self):
+        return reverse("anatomy:question_detail", kwargs={"pk": self.pk})
 
     def GetPrimaryAnswer(self):
-        return self.answers.all().first().answer
+        if len(self.answers.all()) > 0:
+            return self.answers.all().first().answer
+        else:
+            return "None yet..."
 
     def GetExams(self):
         e = self.exams.all().values_list("name", flat=True)
         exams = ", ".join(e)
         return exams
 
-
     def GetUnmarkedAnswersString(self):
         unmarked_answers = self.GetUnmarkedAnswers()
 
@@ -129,11 +158,14 @@ class AnatomyQuestion(models.Model):
             return "No answers to mark"
         return format_html(
             "<span class='warn'>{} answer unmarked:</span> {}".format(
-                len(unmarked_answers), ", ".join(unmarked_answers)))
+                len(unmarked_answers), ", ".join(unmarked_answers)
+            )
+        )
 
     def GetUnmarkedAnswers(self):
         user_answers = set(
-            [i.get_compare_string() for i in self.cid_user_answers.all()])
+            [i.get_compare_string() for i in self.cid_user_answers.all()]
+        )
         unmarked_answers = user_answers - self.GetMarkedAnswers()
 
         return unmarked_answers
@@ -142,30 +174,40 @@ class AnatomyQuestion(models.Model):
         return len(self.GetUnmarkedAnswers())
 
     def GetMarkedAnswers(self):
-        return set([i.get_compare_string() for i in self.answers.all() if i.status != i.MarkOptions.UNMARKED])
+        return set(
+            [
+                i.get_compare_string()
+                for i in self.answers.all()
+                if i.status != i.MarkOptions.UNMARKED
+            ]
+        )
         correct_answers = set([i.answer.lower() for i in self.answers.all()])
         half_mark_answers = set(
-            [i.answer.lower() for i in self.half_mark_answers.all()])
+            [i.answer.lower() for i in self.half_mark_answers.all()]
+        )
         incorrect_answers = set(
-            [i.answer.lower() for i in self.incorrect_answers.all()])
+            [i.answer.lower() for i in self.incorrect_answers.all()]
+        )
 
         marked_answers = correct_answers | half_mark_answers | incorrect_answers
         return marked_answers
 
 
 class Answer(models.Model):
-    question = models.ForeignKey(AnatomyQuestion,
+    question = models.ForeignKey(
-                                 related_name="answers",
+        AnatomyQuestion, related_name="answers", on_delete=models.CASCADE
-                                 on_delete=models.CASCADE)
+    )
     answer = models.CharField(max_length=500)
 
     class MarkOptions(models.TextChoices):
-        UNMARKED = '', _('Unmarked')
+        UNMARKED = "", _("Unmarked")
-        INCORRECT = '0', _('Incorrect')
+        INCORRECT = "0", _("Incorrect")
-        HALF_MARK = '1', _('Half mark')
+        HALF_MARK = "1", _("Half mark")
-        CORRECT = '2', _('Correct')
+        CORRECT = "2", _("Correct")
 
-    status = models.CharField(max_length=1, choices=MarkOptions.choices, default=MarkOptions.UNMARKED)
+    status = models.CharField(
+        max_length=1, choices=MarkOptions.choices, default=MarkOptions.UNMARKED
+    )
 
     def __str__(self):
         return self.answer
@@ -178,7 +220,7 @@ class Answer(models.Model):
         return self.answer.lower()
 
 
-#class HalfMarkAnswers(models.Model):
+# class HalfMarkAnswers(models.Model):
 #    question = models.ForeignKey(AnatomyQuestion,
 #                                 related_name="half_mark_answers",
 #                                 on_delete=models.CASCADE)
@@ -192,7 +234,7 @@ class Answer(models.Model):
 #            self.answer.strip()
 #
 #
-#class IncorrectAnswers(models.Model):
+# class IncorrectAnswers(models.Model):
 #    question = models.ForeignKey(AnatomyQuestion,
 #                                 related_name="incorrect_answers",
 #                                 on_delete=models.CASCADE)
@@ -208,14 +250,17 @@ class Answer(models.Model):
 
 class Exam(models.Model):
     name = models.CharField(max_length=200)
-    exam_questions = SortedManyToManyField(AnatomyQuestion,
+    exam_questions = SortedManyToManyField(
-                                            related_name="exams", blank="true")
+        AnatomyQuestion, related_name="exams", blank="true"
+    )
 
-    active = models.BooleanField(help_text="If an exam should be available",
+    active = models.BooleanField(
-                                 default=True)
+        help_text="If an exam should be available", default=True
+    )
 
-    recreate_json = models.BooleanField(help_text="If the json cache needs updating",
+    recreate_json = models.BooleanField(
-                                 default=False)
+        help_text="If the json cache needs updating", default=False
+    )
 
     def __str__(self):
         return self.name
@@ -224,26 +269,24 @@ class Exam(models.Model):
         return self.name
 
     def get_json_url(self):
-        return reverse('anatomy:exam_json', args=(self.pk, ))
+        return reverse("anatomy:exam_json", args=(self.pk,))
 
 
 class UserAnswer(models.Model):
-    question = models.ForeignKey(AnatomyQuestion,
+    question = models.ForeignKey(
-                                 related_name="user_answers",
+        AnatomyQuestion, related_name="user_answers", on_delete=models.CASCADE
-                                 on_delete=models.CASCADE)
+    )
     answer = models.CharField(max_length=500, blank=True)
-    user = models.ForeignKey(settings.AUTH_USER_MODEL,
+    user = models.ForeignKey(
-                             null=True,
+        settings.AUTH_USER_MODEL, null=True, blank=True, on_delete=models.SET_NULL
-                             blank=True,
+    )
-                             on_delete=models.SET_NULL)
 
     cid = models.IntegerField(blank=True, null=True)
 
     # Each user answer is associated with a particular exam
-    exam = models.ForeignKey(Exam,
+    exam = models.ForeignKey(
-                             related_name="exam",
+        Exam, related_name="exam", on_delete=models.CASCADE, null=True
-                             on_delete=models.CASCADE,
+    )
-                             null=True)
 
     flagged = models.BooleanField(default=False)
 
@@ -255,8 +298,9 @@ class UserAnswer(models.Model):
             exam = self.exam
         except (Exam.DoesNotExist, KeyError) as e:
             exam = "None"
-        return "{}/{}/{}: {}".format(exam, self.cid, self.question.GetPrimaryAnswer(),
+        return "{}/{}/{}: {}".format(
-                                     self.answer)
+            exam, self.cid, self.question.GetPrimaryAnswer(), self.answer
+        )
 
     def clean(self):
         if self.answer:
@@ -265,18 +309,18 @@ class UserAnswer(models.Model):
 
 class CidUserAnswer(models.Model):
     """User answers by candidate"""
-    question = models.ForeignKey(AnatomyQuestion,
+
-                                 related_name="cid_user_answers",
+    question = models.ForeignKey(
-                                 on_delete=models.CASCADE)
+        AnatomyQuestion, related_name="cid_user_answers", on_delete=models.CASCADE
+    )
     answer = models.CharField(max_length=500, blank=True)
 
     cid = models.IntegerField(blank=True, null=True)
 
     # Each user answer is associated with a particular exam
-    exam = models.ForeignKey(Exam,
+    exam = models.ForeignKey(
-                             related_name="cid_user_answers",
+        Exam, related_name="cid_user_answers", on_delete=models.CASCADE, null=True
-                             on_delete=models.CASCADE,
+    )
-                             null=True)
 
     created = models.DateTimeField(auto_now_add=True)
     updated = models.DateTimeField(auto_now=True)
@@ -286,8 +330,9 @@ class CidUserAnswer(models.Model):
             exam = self.exam
         except (Exam.DoesNotExist, KeyError) as e:
             exam = "None"
-        return "{}/{}/{}: {}".format(exam, self.cid, self.question.GetPrimaryAnswer(),
+        return "{}/{}/{}: {}".format(
-                                     self.answer)
+            exam, self.cid, self.question.GetPrimaryAnswer(), self.answer
+        )
 
     def clean(self):
         if self.answer:
@@ -299,9 +344,19 @@ class CidUserAnswer(models.Model):
     def get_answer_score(self):
         q = self.question
         ans = self.answer
-        if q.answers.filter(answer__iexact=ans, status=Answer.MarkOptions.CORRECT).first() is not None:
+        if (
+            q.answers.filter(
+                answer__iexact=ans, status=Answer.MarkOptions.CORRECT
+            ).first()
+            is not None
+        ):
             mark = 2
-        elif q.answers.filter(answer__iexact=ans, status=Answer.MarkOptions.HALF_MARK).first() is not None:
+        elif (
+            q.answers.filter(
+                answer__iexact=ans, status=Answer.MarkOptions.HALF_MARK
+            ).first()
+            is not None
+        ):
             mark = 1
         else:
             mark = 0

anatomy/static/css/anatomy.css

@@ -166,4 +166,113 @@ button a {
 #save-annotations {
     position: absolute;
     left: 0;
+}
+
+.drop-target {
+    border: 1px dashed white;
+}
+
+#drop-container {
+    width: 100%;
+    width: 100vw;
+    height: 100px;
+    text-align: center;
+    font-size: larger;
+    position: sticky;
+    bottom: 0;
+  left: 0%;
+  right: 50%;
+  margin-left: -50vw;
+  margin-right: -50vw;
+}
+
+.submit-button {
+    position: sticky;
+    bottom: 0;
+}
+
+#feedback-drop-target {
+    float: right;
+    height: 100%;
+    width: 30%;
+}
+
+.drop-target-active {
+    background-color: #427aa1;
+}
+
+#drop-filenames span {
+    font-size: xx-small;
+    color: gray;
+    padding-right: 1em;
+
+}
+
+.image-formset {
+    border: 1px solid white;
+}
+
+select, input {
+    background-color: #05668d;
+    color: white;
+    border: none;
+}
+
+table.table {
+    color: white;
+}
+
+#view-filter-options {
+    float: right;
+}
+
+.rapid-img {
+    width: 50%;
+}
+
+.feedback-img {
+    border: 1px solid #05668d;
+}
+
+img.uploading {
+    margin-top: -20px;
+    height: 75%;
+    float: right;
+}
+
+img.uploading:hover {
+    height: 95%;
+    position: fixed;
+  top: 50%;
+  left: 50%;
+  /* bring your own prefixes */
+  transform: translate(-50%, -50%)
+}
+
+.image-ident-warning {
+    border: 2px solid red;
+}
+
+
+.image-ident-loading {
+	background: rgba(142, 68, 173, 1);
+	box-shadow: 0 0 0 0 rgba(142, 68, 173, 1);
+	animation: pulse-purple 2s infinite;
+}
+
+@keyframes pulse-purple {
+	0% {
+		transform: scale(0.95);
+		box-shadow: 0 0 0 0 rgba(142, 68, 173, 0.7);
+	}
+	
+	70% {
+		transform: scale(1);
+		box-shadow: 0 0 0 10px rgba(142, 68, 173, 0);
+	}
+	
+	100% {
+		transform: scale(0.95);
+		box-shadow: 0 0 0 0 rgba(142, 68, 173, 0);
+	}
 }

anatomy/templates/anatomy/anatomyquestion_form.html

@@ -0,0 +1,260 @@
+{% extends "anatomy/base.html" %}
+
+{% load static %}
+
+{% block js %}
+<!--<script type="text/javascript" src="/admin/jsi18n/"></script>-->
+
+<script type="text/javascript">
+    function showEditPopup(url) {
+        var win = window.open(url, "Edit",
+            'height=500,width=800,resizable=yes,scrollbars=yes');
+        return false;
+    }
+    function showAddPopup(triggeringLink) {
+        var name = triggeringLink.id.replace(/^add_/, '');
+        href = triggeringLink.href;
+        var win = window.open(href, name, 'height=500,width=800,resizable=yes,scrollbars=yes');
+        win.focus();
+        return false;
+    }
+    function closePopup(win, newID, newRepr, id) {
+        console.log(id)
+        $(id + "_to").append('<option value=' + newID + ' title=' + newRepr + ' >' + newRepr + '</option>')
+        win.close();
+    }
+
+    document.addEventListener('drop', function (e) { e.preventDefault(); }, false);
+
+    function add_input_form() {
+        var form_idx = $('#id_answers-TOTAL_FORMS').val();
+        $('#form_set').append($('#empty_form').html().replace(/__prefix__/g, form_idx));
+        $('#id_answers-TOTAL_FORMS').val(parseInt(form_idx) + 1);
+    }
+
+
+    $(document).ready(function () {
+        $("#add_abnormality").appendTo($("label[for='id_abnormality']"));
+        $("#add_examination").appendTo($("label[for='id_examination']"));
+        $("#add_region").appendTo($("label[for='id_region']"));
+
+
+        dropContainer = document.getElementById("drop-container");
+
+        dropContainer.ondragover = function (evt) {
+            evt.preventDefault();
+            evt.stopPropagation();
+        };
+
+        dropContainer.ondragenter = function (evt) {
+            $(evt.target).addClass("drop-target-active")
+            evt.preventDefault();
+            evt.stopPropagation();
+        };
+
+        dropContainer.ondragleave = function (evt) {
+            $(evt.target).removeClass("drop-target-active")
+            evt.preventDefault();
+            evt.stopPropagation();
+        };
+
+        dropContainer.ondrop = function (evt) {
+            console.log("drop event, ", evt);
+            $(evt.target).removeClass("drop-target-active");
+
+            // Get all input elements
+            input = document.getElementById("id_image");
+            //fileInput = document.getElementById("id_images-0-image");
+
+            f = evt.dataTransfer.files[0]
+
+            let dT = new DataTransfer();
+            dT.clearData();
+            dT.items.add(f);
+
+            input.files = dT.files;
+
+            ocr(input);
+
+            // Make sure we have enough input targets
+            //input_diff = (evt.dataTransfer.files.length - inputs.length)
+            //console.log("diff", input_diff)
+
+            //if (input_diff > 0) {
+            //    for (let j = 0; j < input_diff; j++) {
+            //        add_input_form()
+            //    }
+
+            //    // Need to make sure we include the new ones...
+            //    inputs = $("#rapid-form input[type=file][id^=id_images-]");
+            //}
+
+            // Loop through each dropped file and try to assign to an
+            // input element
+            //[...evt.dataTransfer.files].forEach((f) => {
+            //    let dT = new DataTransfer();
+            //    dT.clearData();
+            //    dT.items.add(f);
+            //    for (let i = 0; i < inputs.length; i++) {
+            //        el = inputs.get(i)
+
+            //        if (el.files.length == 0) {
+            //            el.files = dT.files;
+            //            ocr(el)
+
+            //            if (evt.target.id == "feedback-drop-target") {
+            //                arr = el.name.split("-");
+            //                arr.splice(2, 1, "feedback_image");
+            //                feedback_el_name = arr.join("-");
+
+            //                $(`[name=${feedback_el_name}]`).prop("checked", true);
+            //            }
+            //            return false
+            //        }
+            //    }
+            //})
+
+            // // If you want to use some of the dropped files
+            // const dT = new DataTransfer();
+            // dT.items.add(evt.dataTransfer.files[0]);
+            // dT.items.add(evt.dataTransfer.files[3]);
+            // fileInput.files = dT.files;
+
+            evt.preventDefault();
+            evt.stopPropagation();
+            updateFileList();
+        };
+
+
+        $('#add_more').click(() => { add_input_form() });
+
+        function updateFileList() {
+            $("#drop-filenames").empty()
+            $("#id_image").each((n, el) => {
+                console.log(el);
+                if (el.files.length > 0) {
+                    extra_class = " image-ident-loading";
+                    if ($(el).hasClass("image-ident-warning")) {
+                        extra_class = " image-ident-warning"
+                    } else if ($(el).hasClass("image-ident-ok")) {
+                        extra_class = " image-ident-ok"
+                    }
+                    $("#drop-filenames").append(
+                        `<span>${n}: ${el.files[0].name}</span><img class='uploading${extra_class}' data-input-id='${el.id}' src=${URL.createObjectURL(el.files[0])}>`
+                    )
+                }
+            })
+
+        }
+
+        $("input[type=file]").on('change', function () {
+            $(this).removeClass("image-ident-warning");
+            $(this).removeClass("image-ident-ok");
+            updateFileList();
+            console.log("input change1");
+            console.log("input change", this);
+            ocr(this);
+        });
+
+        //document.getElementById("id_question_type").selectedIndex = 1;
+        answer_1_status = document.getElementById("id_answers-0-status").selectedIndex;
+        if (answer_1_status == 0) {
+            document.getElementById("id_answers-0-status").selectedIndex = 3;
+        }
+
+    });
+    function ocr(input) {
+        // Tesseract.recognize(f, "eng",{ logger: m => console.log(m) }
+        // ).then(({ data: { text } }) => {
+        //   console.log(text);
+        //   l = text.toLowerCase();
+        //   if (l.includes("accesion") || l.includes("number") || l.search(/(REF|RK9|RH8|RA9)\d+/g)) {
+        //       console.log("SHIT", this);
+        //   }
+        // })
+
+        const worker = Tesseract.createWorker({
+            workerPath: '{% static "worker.min.js" %}',
+            langPath: '{% static "" %}',
+            //langPath: '{{ STATIC_URL }}',
+            corePath: '{% static "tesseract-core.wasm.js" %}',
+        });
+
+        const url = URL.createObjectURL(input.files[0]);
+        let img = new Image;
+        img.src = url;
+
+        img.onload = function () {
+
+
+            width = img.width;
+
+            // const rectangle = { left: 0, top: 0, width: width, height: 10 }
+
+
+            (async () => {
+                await worker.load();
+                await worker.loadLanguage('eng');
+                await worker.initialize('eng');
+                // const { data: { text } } = await worker.recognize(input.files[0], { rectangle });
+                const { data: { text } } = await worker.recognize(input.files[0]);
+                //console.log(text);
+                l = text.toLowerCase();
+                $(`img[data-input-id='${input.id}'`).removeClass("image-ident-loading");
+                console.log(l);
+                if (l.includes("accesion") || l.includes("number") || l.search(/(ref|rk9|rh8|ra9|rbz)\d+/g) > -1) {
+                    console.log("SHIT", input);
+                    $(input).addClass("image-ident-warning");
+                    $(`img[data-input-id='${input.id}'`).addClass("image-ident-warning");
+                } else {
+                    $(input).addClass("image-ident-ok");
+
+                }
+
+                await worker.terminate();
+            })();
+        }
+    }
+
+</script>
+
+{{ form.media }}
+{% endblock %}
+{% block content %}
+<h2>Submit Question</h2>
+<form action="" method="post" enctype="multipart/form-data" id="anatomyquestion-form">
+    {% csrf_token %}
+    <a href="/rapids/abnormality/create" id="add_abnormality" class="add-popup"
+        onclick="return showAddPopup(this);"><img src="{% static '/img/icon-addlink.svg' %}"></a>
+    <a href="/rapids/examination/create" id="add_examination" class="add-popup"
+        onclick="return showAddPopup(this);"><img src="{% static '/img/icon-addlink.svg' %}"></a>
+    <a href="/rapids/region/create" id="add_region" class="add-popup" onclick="return showAddPopup(this);"><img
+            src="{% static '/img/icon-addlink.svg' %}"></a>
+
+    <table>
+        {{ form.as_table }}
+    </table>
+    <div id="drop-container" class="drop-target">Drop image here
+        <div id="drop-filenames"></div>
+    </div>
+    <h3>Answers:</h3>
+    <input type="button" value="Add More Answers" id="add_more">
+    <div id="form_set">
+        {% for form in answer_formset %}
+        <ul class="no-error answer-formset">
+            {{form.non_field_errors}}
+            {{form.errors}}
+            {{ form.as_ul }}
+        </ul>
+        {% endfor %}
+    </div>
+    {{ answer_formset.management_form }}
+    <input type="submit" class="submit-button" value="Submit" name="submit">
+    <input type="submit" class="submit-button" value="Submit and Clone" name="submit-clone">
+</form>
+<div id="empty_form" style="display:none">
+    <ul class='no_error answer-formset'>
+        {{ answer_formset.empty_form.as_ul }}
+    </ul>
+</div>
+{% endblock %}

anatomy/templates/anatomy/base.html

@@ -16,7 +16,8 @@
     <script src="{% static 'js/cornerstone/cornerstoneWADOImageLoader.js' %}"></script>
     <script src="{% static 'js/cornerstone/cornerstone-base64-image-loader.umd.js' %}"></script>
     <script src="{% static 'js/anatomy.js' %}" defer="defer"></script>
-
+    {% block js %}
+    {% endblock %}
 </head>
 
 <body>

anatomy/urls.py

@@ -7,6 +7,8 @@ urlpatterns = [
     # path('', views.question_list, name='question_list'),
     path("", views.index, name="index"),
     path("question/<int:pk>/", views.question_detail, name="question_detail"),
+    path("question/create/", views.AnatomyQuestionCreate.as_view(), name="anatomy_question_create"),
+    path("question/<int:pk>/update", views.AnatomyQuestionUpdate.as_view(), name="anatomy_question_create"),
     path("question/<int:pk>/save_annotation", views.question_save_annotation, name="question_save_annotation"),
     path("question/<int:pk>/answer/",
          views.answer_question,

anatomy/views.py

@@ -6,14 +6,22 @@ from django import forms
 from django.contrib.auth.decorators import login_required, user_passes_test
 from django.contrib.auth.models import User
 
+from django.contrib.auth.mixins import LoginRequiredMixin
+
+from django.views.generic.edit import CreateView, UpdateView, DeleteView
+from django.views.generic import ListView
+
 from django.db.models.functions import Lower
 
 from django.core.cache import cache
 
+from django.urls import reverse_lazy, reverse
+
 from django.http import Http404, JsonResponse
 
+from django.http import HttpResponseRedirect, HttpResponse
 
-from .forms import AnatomyAnswerForm, MarkAnatomyQuestionForm
+from .forms import AnatomyAnswerForm, AnswerFormSet, MarkAnatomyQuestionForm, AnatomyQuestionForm
 from .models import (
     AnatomyQuestion,
     CidUserAnswer,
@@ -748,4 +756,107 @@ def cid_scores(request, pk):
             "exams": exams,
             "cid": cid,
         },
-    )
+    )
+
+class AnatomyQuestionCreateBase(LoginRequiredMixin, CreateView):
+    model = AnatomyQuestion
+    form_class = AnatomyQuestionForm
+
+    def get_context_data(self, **kwargs):
+        context = super(AnatomyQuestionCreateBase, self).get_context_data(**kwargs)
+        if self.request.POST:
+            context['answer_formset'] = AnswerFormSet(self.request.POST,
+                                                    self.request.FILES)
+        else:
+            context['answer_formset'] = AnswerFormSet()
+        return context
+
+    def form_valid(self, form):
+
+        self.object = form.save(commit=False)
+        self.object.save()
+
+        form.instance.author.add(self.request.user.id)
+
+        context = self.get_context_data(form=form)
+        formset = context['answer_formset']
+
+        if formset.is_valid():
+            response = super().form_valid(form)
+            formset.instance = self.object
+            formset.save()
+            # If the normal submit button is pressed we save as normal
+            if "submit" in self.request.POST:
+                return response
+            # else we redirect to the clone url
+            else:
+                return redirect('AnatomyQuestions:AnatomyQuestion_clone', pk=self.object.pk)
+
+        else:
+            return super().form_invalid(form)
+
+
+#@login_required
+class AnatomyQuestionCreate(AnatomyQuestionCreateBase):
+
+    #initial = {'laterality': AnatomyQuestion.NONE}
+
+    def get_initial(self):
+        pass
+#        # There has to be a better way...
+#        try:
+#            s = (i.pk for i in self.request.user.AnatomyQuestion_default.site.all())
+#            self.initial.update({'site': s})
+#        except AttributeError:
+#            pass
+#        return self.initial
+#
+    #    fields = '__all__'
+    #    #fields = [ 'condition' ]
+    #    #initial = {'date_of_death': '05/01/2018'}
+    #    exclude = [ 'created_date', 'published_date' ]
+
+    #self.object = form.save(commit=False)
+    #self.object.save()
+
+    #form.instance.author.add(self.request.user.id)
+    #return super().form_valid(form)
+
+
+#class AnatomyQuestionUpdate(LoginRequiredMixin, AuthorOrCheckerRequiredMixin,
+class AnatomyQuestionUpdate(LoginRequiredMixin, UpdateView):
+    model = AnatomyQuestion
+    form_class = AnatomyQuestionForm
+
+    #    fields = '__all__'
+    #    #fields = [ 'condition' ]
+    #    #initial = {'date_of_death': '05/01/2018'}
+    #    exclude = [ 'created_date', 'published_date' ]
+    def get_context_data(self, **kwargs):
+        context = super(AnatomyQuestionUpdate, self).get_context_data(**kwargs)
+        if self.request.POST:
+            context['answer_formset'] = AnswerFormSet(self.request.POST,
+                                                    self.request.FILES,
+                                                    instance=self.object)
+            context['answer_formset'].full_clean()
+        else:
+            context['answer_formset'] = AnswerFormSet(instance=self.object)
+        return context
+
+    def form_valid(self, form):
+
+        self.object = form.save(commit=False)
+        self.object.save()
+
+        form.instance.author.add(self.request.user.id)
+
+        context = self.get_context_data(form=form)
+        formset = context['answer_formset']
+        #logger.debug(formset.is_valid())
+        if formset.is_valid():
+            response = super().form_valid(form)
+            formset.instance = self.object
+            formset.save()
+            return response
+        else:
+            return super().form_invalid(form)