start integrating cimar

atlas/views.py

@@ -22,6 +22,7 @@ from django.contrib.auth.mixins import LoginRequiredMixin, PermissionRequiredMix
 from django.views.generic import View
 from django.views.generic.detail import DetailView
 import pydicom
+from pydicom.uid import generate_uid
 from generic.mixins import SuperuserRequiredMixin
 
 from django.views.generic.edit import CreateView, UpdateView, DeleteView, FormView
@@ -33,8 +34,9 @@ from django.urls import reverse_lazy, reverse
 from django.http import Http404, JsonResponse
 from django.http import HttpResponseRedirect, HttpResponse
 
-from generic.models import CidUser, CidUserExam
+from generic.models import CidUser, CidUserExam, CimarCase
 from atlas.helpers import get_cases_available_to_user
+from rad.settings import REMOTE_URL, CIMAR_USERNAME, CIMAR_PASSWORD
 
 from .forms import (
     AddCollectionToCaseForm,
@@ -159,6 +161,8 @@ import reversion
 import os
 import difflib
 
+from helpers.cimar import CimarAPI
+
 logger = logging.getLogger(__name__)
 
 
@@ -195,7 +199,7 @@ def case_detail(request, pk):
     #    raise PermissionDenied
 
     # logging.debug(atlas.subspecialty.first().name.all())
-    return render(request, "atlas/case_detail.html", {"case": case})
+    return render(request, "atlas/case_detail.html", {"case": case, "cimar_sid":request.user.userprofile.cimar_sid})
 
 @login_required
 @user_is_author_or_atlas_series_checker_or_atlas_marker_or_open_access
@@ -955,6 +959,9 @@ class AtlasCreateBase(RevisionMixin, LoginRequiredMixin):
 
         form.instance.author.add(self.request.user.id)
 
+        # Check Cimar Case
+        #CimarAPI().get_study_by_uuid(self.object.cimar_uuid)
+
         context = self.get_context_data(form=form)
         series_formset = context["series_formset"]
         casedifferential_formset = context["casedifferential_formset"]
@@ -2390,6 +2397,7 @@ def collection_case_view(request, pk, case_number):
             "previous": previous,
             "next": next,
             "answer": answer,
+            "cimar_sid":request.user.userprofile.cimar_sid
         },
     )
 
@@ -2419,6 +2427,7 @@ def collection_case_dicom_json(request, exam_id, case_id):
     return JsonResponse(case_detail.case.get_case_dicom_json(priors=priors))
 
 
+
 def case_dicom_json(request, pk):
     case = get_object_or_404(Case, pk=pk)
 
@@ -2971,3 +2980,29 @@ def collection_reset_answers(request, exam_id: int):
 
     else:
         raise Http404("Invalid request")
+
+def push_case_to_cimar(request, case_id):
+    case = get_object_or_404(Case, pk=case_id)
+
+    api = CimarAPI()
+    api.login(username=CIMAR_USERNAME, password=CIMAR_PASSWORD)
+
+    # We use the same study_uid for all images in a case
+    study_uid = generate_uid()
+
+    for series in case.get_series():
+        for image in series.images.all():
+            data = api.upload_dicom(image.image.path, study_uid=study_uid)
+
+    
+    cimar_uuid = api.get_study_by_study_uid(data["study_uid"])["uuid"]
+
+    case.cimar_uuid = cimar_uuid
+
+    case.save()
+
+    cimar_case, created = CimarCase.objects.get_or_create(uuid=cimar_uuid)
+
+    cimar_case.refresh_study()
+
+    return HttpResponse("Success")