From a99750e5791c6f75ef4b71180ab49580da00aeb1 Mon Sep 17 00:00:00 2001
From: Ross <xkjq@ymail.com>
Date: Tue, 22 Mar 2022 22:33:34 +0000
Subject: [PATCH] .

---
 .../templates/atlas/collection_case_view.html |  15 +-
 .../atlas/collection_series_viewer.html       | 172 ++++++++++++++++++
 atlas/views.py                                |   6 +-
 3 files changed, 188 insertions(+), 5 deletions(-)
 create mode 100755 atlas/templates/atlas/collection_series_viewer.html

diff --git a/atlas/templates/atlas/collection_case_view.html b/atlas/templates/atlas/collection_case_view.html
index a4c6ef56..775fe520 100644
--- a/atlas/templates/atlas/collection_case_view.html
+++ b/atlas/templates/atlas/collection_case_view.html
@@ -3,8 +3,8 @@
 {% block content %}
 <h2>Case {{case_number|add:1}}</h2>
 
-    <div class="pre-whitespace multi-image-block"><b>Series:</b>
-        {% for series in case.series.all %}
+    <div class="pre-whitespace multi-image-block">
+        {% for series in series_list %}
             <span class="series-block">
                 <span>
                     Series {{ forloop.counter }}:
@@ -17,15 +17,24 @@
                 </span>
             </span>
         {% endfor %}
-        <a href="{% url 'atlas:series_id_create' pk=case.pk %}">Add new series</a><br />
     </div>
 
+        {% for series in series_list %}
+<div>
+<div id="single-dicom-viewer" class="dicom-viewer" data-images="{{ series.get_image_url_array }}" data-annotations=''>
+</div>
+
+</div>
+
+        {% endfor %}
+<div>
 {% if previous %}
     <a href="{% url 'atlas:collection_case_view' pk=collection.pk case_number=case_number|add:-1 %}">Previous</a>
 {% endif %}
 {% if next %}
     <a href="{% url 'atlas:collection_case_view' pk=collection.pk case_number=case_number|add:1 %}">Next</a>
 {% endif %}
+</div>
 <br/>
 Return to <a href='{{collection.get_absolute_url}}'>collection</a>
 {% endblock %}
\ No newline at end of file
diff --git a/atlas/templates/atlas/collection_series_viewer.html b/atlas/templates/atlas/collection_series_viewer.html
new file mode 100755
index 00000000..4c4b8ebf
--- /dev/null
+++ b/atlas/templates/atlas/collection_series_viewer.html
@@ -0,0 +1,172 @@
+<div>{{ series.modality}}, {{ series.examination }}, {{ series.plane }}, {{ series.contrast }}</div>
+
+
+<div id="single-dicom-viewer" class="dicom-viewer" data-images="{{ series.get_image_url_array }}" data-annotations=''>
+</div>
+
+{% if editing_finding < 1 %}
+<button id="add-finding-button">Add finding</button>
+{% endif %}
+<button id="reset-viewport-button">Reset viewport</button>
+<div id="finding-form">
+    <div class="hide" id="hidden-form">
+        <form method="post" id="series_finding_form">
+            {% csrf_token %}
+            {{series_finding_form.management_form}}
+            <div>
+                <div>Description: {{ series_finding_form.description }}</div>
+                <div>Findings: {{ series_finding_form.findings }}</div>
+                <div>Structures: {{ series_finding_form.structures }}</div>
+            </div>
+            <input type="submit" value="Submit">
+            <button id="cancel-add-finding-button">Cancel</button>
+        </form>
+    </div>
+</div>
+
+<details open>
+    <summary>Findings</summary>
+
+    {% for finding in series.findings.all %}
+    <div class="finding-box">
+        <button class="view-finding-button" data-annotationjson={{finding.annotation_json}}
+            data-viewportjson={{finding.viewport_json}} data-findingid={{finding.id}}>Click to view</button>
+        <span class="view-finding-details">
+            Finding(s): {% for f in finding.findings.all %}{{f.get_link}}{% endfor %}<br />
+            Structure(s): {% for s in finding.structures.all %}{{s.get_link}}{% endfor %}<br />
+            Description: {{finding.description}}<br />
+        </span>
+        <a href="{% url 'atlas:series_edit_finding' pk=series.pk finding_pk=finding.pk %}" class="edit-finding-link">Edit</a>
+        <a href="{% url 'atlas:delete_finding' pk=finding.pk %}" class="delete-finding-link">Delete</a>
+    </div>
+
+    {% endfor %}
+</details>
+
+
+<div>Author: {{ series.get_author_display }}</div>
+<details>
+    <summary>Image info</summary>
+    <div>
+        <a href="{% url 'atlas:series_order_dicom' pk=series.pk %}" title="orders dicom by slice location">Order dicoms
+            by slice location</a>
+        <a href="{% url 'atlas:series_order_dicom_instance' pk=series.pk %}"
+            title="orders dicom by instance number">Order dicoms by instance number</a>
+        <a href="{% url 'atlas:series_order_dicom_SeriesInstanceUID' pk=series.pk %}"
+            title="orders dicom by instance number">Order dicoms by SeriesInstanceUID</a>
+        <a href="{% url 'atlas:series_order_upload_filename' pk=series.pk %}"
+            title="orders dicom by uploaded filename">Order by uploaded filename</a>
+    </div>
+    {% for image in series.images.all %}
+    {{image.image.url}}, pos: {{image.position}}, {{image.upload_filename}} [{{image.image.size|filesizeformat}}]<br />
+    {% comment %} {{image.get_dicom_info|safe}}<br /> {% endcomment %}
+
+    {% endfor %}
+
+    <p>Total image size: {{series.get_total_image_size|filesizeformat}}</p>
+    <p><a href="{% url 'atlas:series_download' pk=series.pk %}">Download images</a></p>
+</details>
+
+
+<script>
+    $(document).ready(function () {
+        $("#add-finding-button").click(() => {
+            dicom_element = $(".cornerstone-element").get(0);
+            cornerstoneTools.globalImageIdSpecificToolStateManager.clear(dicom_element);
+            cornerstone.reset(dicom_element);
+            cornerstone.resize(dicom_element, true);
+            //$("#finding-form").empty().append(
+            //    $("#hidden-form form").clone()
+            //);
+            $("#hidden-form").show()
+
+        });
+        $("#cancel-add-finding-button").click((e) => {
+            $("#hidden-form").hide()
+            e.preventDefault();
+        });
+
+
+        $("#reset-viewport-button").click(() => {
+            dicom_element = $(".cornerstone-element").get(0);
+            //annotationjson = JSON.parse(e.currentTarget.dataset.annotationjson);
+            cornerstoneTools.globalImageIdSpecificToolStateManager.clear(dicom_element);
+            cornerstone.reset(dicom_element);
+            cornerstone.resize(dicom_element, true);
+
+        });
+
+        $(".view-finding-button").each((n, el) => {
+            $(el).click((e) => {
+                dicom_element = $(".cornerstone-element").get(0);
+                annotationjson = JSON.parse(e.currentTarget.dataset.annotationjson);
+                viewport = JSON.parse(e.currentTarget.dataset.viewportjson);
+                loadAnnotationAndViewportOnElement(annotationjson, viewport, dicom_element);
+
+
+            });
+
+        });
+
+        {% if editing_finding > 0 %}
+        $("#hidden-form").show() 
+    setTimeout(function() {
+        $(".view-finding-button[data-findingid={{editing_finding}}]").trigger("click");
+    }, 1000)
+        
+        {% endif %}
+    });
+
+    function loadAnnotationAndViewportOnElement(annotation, viewport, dicom_element) {
+        cornerstoneTools.globalImageIdSpecificToolStateManager.clear(dicom_element);
+        cornerstone.getEnabledElement(dicom_element).viewport = viewport
+        cornerstoneTools.globalImageIdSpecificToolStateManager.restoreToolState(
+            annotation);
+        console.log(annotation)
+        //cornerstone.getEnabledElement(dicom_element).toolStateManager.restoreToolState(annotationjson)
+        cornerstone.resize(dicom_element);
+
+        dicomViewer.getNextAnnotationImage(dicom_element);
+
+    }
+
+    $(document).on('submit', '#series_finding_form', function (e) {
+        dicom_element = $(".cornerstone-element").get(0);
+        c = cornerstone.getEnabledElement(dicom_element);
+        e.preventDefault();
+
+        $.ajax({
+            type: 'POST',
+            url: '{% url "atlas:add_finding" %}',
+            data: {
+                series_finding_id: {{ editing_finding }},
+                description: $('#id_description').val(),
+                series: {{ series.pk }},
+                //annotation_json: JSON.stringify(c.toolStateManager.saveToolState()),
+                annotation_json: JSON.stringify(cornerstoneTools.globalImageIdSpecificToolStateManager
+                    .saveToolState()),
+                viewport_json: JSON.stringify(c.viewport),
+                findings: JSON.stringify($('#finding-form select[name="findings"]').find(":selected")
+                    .map((i, el) => {
+                        return $(el).val()
+                    }).toArray()),
+                structures: JSON.stringify($('#finding-form select[name="structures"]').find(
+                        ":selected")
+                    .map((i, el) => {
+                        return $(el).val()
+                    }).toArray()),
+                csrfmiddlewaretoken: $('input[name=csrfmiddlewaretoken]').val(),
+                action: 'post'
+            },
+            success: function (json) {
+                $("#finding-form").empty();
+                toastr.info('Finding added.');
+                location.href='{{series.get_absolute_url}}';
+            },
+            error: function (xhr, errmsg, err) {
+                console.log(xhr.status + ": " + xhr
+                    .responseText); // provide a bit more info about the error to the console
+            }
+        });
+    });
+</script>
\ No newline at end of file
diff --git a/atlas/views.py b/atlas/views.py
index f40b0036..40e6f934 100755
--- a/atlas/views.py
+++ b/atlas/views.py
@@ -907,11 +907,13 @@ def collection_detail_view(request, pk):
 def collection_case_view(request, pk, case_number):
     collection = get_object_or_404(CaseCollection, pk=pk)
 
-    cases = collection.cases.all()
+    cases = collection.cases.all().prefetch_related()
     case = cases[case_number]
 
+    series_list = case.series.all().prefetch_related("images", "examination", "plane")
+
     previous = case_number > 0
     next = case_number < (len(cases) - 1)
 
 
-    return render(request, "atlas/collection_case_view.html", {"collection": collection, "case": case, "case_number": case_number, "previous": previous, "next": next})
\ No newline at end of file
+    return render(request, "atlas/collection_case_view.html", {"collection": collection, "case": case, "series_list": series_list, "case_number": case_number, "previous": previous, "next": next})
\ No newline at end of file