Start

anatomy/admin.py

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+from django.contrib import admin
+from .models import (
+    AnatomyQuestion,
+    Examination,
+    QuestionType,
+    Answers,
+    HalfMarkAnswers,
+    IncorrectAnswers,
+    UserAnswer,
+    Exam,
+    Modality,
+    BodyPart,
+    Structure,
+)
+
+from reversion.admin import VersionAdmin
+
+# Register your models here.
+class AnatomyAnswersInline(admin.TabularInline):
+    model = Answers
+    extra = 1
+
+
+class HalfMarkAnatomyAnswersInline(admin.TabularInline):
+    model = HalfMarkAnswers
+    extra = 1
+
+
+class IncorrectAnatomyAnswersInline(admin.TabularInline):
+    model = IncorrectAnswers
+    extra = 1
+
+
+class ExamInline(admin.TabularInline):
+    model = AnatomyQuestion.exams.through
+    extra = 1
+
+
+class AnatomyAdmin(VersionAdmin):
+    inlines = [
+        AnatomyAnswersInline,
+        HalfMarkAnatomyAnswersInline,
+        IncorrectAnatomyAnswersInline,
+        ExamInline,
+    ]
+
+
+admin.site.register(AnatomyQuestion, AnatomyAdmin)
+admin.site.register(Examination)
+admin.site.register(QuestionType)
+admin.site.register(UserAnswer)
+admin.site.register(Exam)
+admin.site.register(Modality)
+admin.site.register(BodyPart)
+admin.site.register(Structure)
+

anatomy/apps.py

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+from django.apps import AppConfig
+
+
+class AnatomyConfig(AppConfig):
+    name = 'anatomy'

anatomy/forms.py

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+from django import forms
+
+from .models import UserAnswer, AnatomyQuestion
+
+
+class AnatomyAnswerForm(forms.ModelForm):
+    class Meta:
+        model = UserAnswer
+        fields = ("answer",)
+
+
+class MarkAnatomyQuestionForm(forms.Form):
+    # correct = forms.CharField(required=False)
+    # half_correct = forms.CharField(required=False)
+    # incorrect = forms.CharField(required=False)
+    marked_answers = forms.CharField(required=False)

anatomy/models.py

@@ -0,0 +1,242 @@
+from django.db import models
+from django.utils import timezone
+
+from django.core.files.storage import FileSystemStorage
+from django.conf import settings
+
+image_storage = FileSystemStorage(
+    # Physical file location ROOT
+    location=u"{0}/anatomy/".format(settings.MEDIA_ROOT),
+    # Url for file
+    base_url=u"{0}anatomy/".format(settings.MEDIA_URL),
+)
+
+
+def image_directory_path(instance, filename):
+    # file will be uploaded to MEDIA_ROOT/anatomy/picture/<filename>
+    return u"picture/{0}".format(filename)
+
+
+class Examination(models.Model):
+    examination = models.CharField(max_length=200)
+
+    def __str__(self):
+        return self.examination
+
+
+class BodyPart(models.Model):
+    bodypart = models.CharField(max_length=200)
+
+    def __str__(self):
+        return self.bodypart
+
+
+class Structure(models.Model):
+    bodypart = models.CharField(max_length=200)
+
+    def __str__(self):
+        return self.bodypart
+
+
+class Modality(models.Model):
+    modality = models.CharField(max_length=200)
+
+    def __str__(self):
+        return self.modality
+
+
+class QuestionType(models.Model):
+    text = models.CharField(max_length=400)
+
+    def __str__(self):
+        return self.text
+
+
+class AnatomyQuestion(models.Model):
+    # author = models.ForeignKey('auth.User', on_delete=models.CASCADE)
+    # image = models.ImageField()
+    # feedback = models.TextField(null=True)
+    question_type = models.ForeignKey(QuestionType,
+                                      on_delete=models.SET_NULL,
+                                      null=True)
+
+    image = models.ImageField(upload_to=image_directory_path,
+                              storage=image_storage)
+
+    description = models.CharField(
+        max_length=400,
+        help_text=
+        "Short description of the image e.g. 'Sagittal CT Chest, Abdomen & Pelvis', will be displayed as the title."
+    )
+
+    examination = models.ForeignKey(Examination,
+                                    on_delete=models.SET_NULL,
+                                    null=True, blank=True)
+    modality = models.ForeignKey(Modality,
+                                 on_delete=models.SET_NULL,
+                                 null=True)
+    body_part = models.ForeignKey(BodyPart,
+                                  on_delete=models.SET_NULL,
+                                  null=True,
+                                  blank=True)
+    structure = models.ForeignKey(Structure,
+                                  on_delete=models.SET_NULL,
+                                  null=True,
+                                  blank=True)
+    created_date = models.DateTimeField(default=timezone.now)
+
+    def __str__(self):
+        # Get first answer
+        a = self.answers.all().first()
+
+        # Get associated exams
+        e = self.exams.all().values_list("name", flat=True)
+        exams = ", ".join(e)
+
+        if a is None:
+            return "({})".format(exams)
+        else:
+            return "{} ({}) [{}, {}]".format(a.answer, exams, self.modality,
+                                             self.structure)
+
+    def GetUnmarkedAnswersString(self):
+        unmarked_answers = self.GetUnmarkedAnswers()
+
+        if not unmarked_answers:
+            return "No answers to mark"
+        return "{} answer unmarked: {}".format(len(unmarked_answers),
+                                               ", ".join(unmarked_answers))
+
+    def GetUnmarkedAnswers(self):
+        user_answers = set([i.answer for i in self.user_answers.all()])
+        unmarked_answers = user_answers - self.GetMarkedAnswers()
+
+        return unmarked_answers
+
+    def GetMarkedAnswers(self):
+        correct_answers = set([i.answer for i in self.answers.all()])
+        half_mark_answers = set(
+            [i.answer for i in self.half_mark_answers.all()])
+        incorrect_answers = set(
+            [i.answer for i in self.incorrect_answers.all()])
+
+        marked_answers = correct_answers | half_mark_answers | incorrect_answers
+        return marked_answers
+
+
+class Answers(models.Model):
+    question = models.ForeignKey(AnatomyQuestion,
+                                 related_name="answers",
+                                 on_delete=models.CASCADE)
+    answer = models.CharField(max_length=500)
+
+    def __str__(self):
+        return self.answer
+
+    def clean(self):
+        if self.answer:
+            self.answer.strip()
+
+
+class HalfMarkAnswers(models.Model):
+    question = models.ForeignKey(AnatomyQuestion,
+                                 related_name="half_mark_answers",
+                                 on_delete=models.CASCADE)
+    answer = models.CharField(max_length=500)
+
+    def __str__(self):
+        return self.answer
+
+    def clean(self):
+        if self.answer:
+            self.answer.strip()
+
+
+class IncorrectAnswers(models.Model):
+    question = models.ForeignKey(AnatomyQuestion,
+                                 related_name="incorrect_answers",
+                                 on_delete=models.CASCADE)
+    answer = models.CharField(max_length=500)
+
+    def __str__(self):
+        return self.answer
+
+    def clean(self):
+        if self.answer:
+            self.answer.strip()
+
+
+class Exam(models.Model):
+    name = models.CharField(max_length=200)
+    exam_questions = models.ManyToManyField(AnatomyQuestion,
+                                            related_name="exams")
+
+    def __str__(self):
+        return self.name
+
+
+class UserAnswer(models.Model):
+    question = models.ForeignKey(AnatomyQuestion,
+                                 related_name="user_answers",
+                                 on_delete=models.CASCADE)
+    answer = models.CharField(max_length=500, blank=True)
+    user = models.ForeignKey(settings.AUTH_USER_MODEL,
+                             null=True,
+                             blank=True,
+                             on_delete=models.SET_NULL)
+
+    cid = models.IntegerField(blank=True, null=True)
+
+    # Each user answer is associated with a particular exam
+    exam = models.ForeignKey(Exam,
+                             related_name="exam",
+                             on_delete=models.CASCADE,
+                             null=True)
+
+    flagged = models.BooleanField(default=False)
+
+    created = models.DateTimeField(auto_now_add=True)
+    updated = models.DateTimeField(auto_now=True)
+
+    def __str__(self):
+        try:
+            exam = self.exam
+        except (Exam.DoesNotExist, KeyError) as e:
+            exam = "None"
+        return "{}/{}/{}: {}".format(exam, self.cid, self.question.id,
+                                     self.answer)
+
+    def clean(self):
+        if self.answer:
+            self.answer.strip()
+
+
+class CidUserAnswer(models.Model):
+    """User answers by candidate"""
+    question = models.ForeignKey(AnatomyQuestion,
+                                 related_name="cid_user_answers",
+                                 on_delete=models.CASCADE)
+    answer = models.CharField(max_length=500, blank=True)
+
+    cid = models.IntegerField(blank=True, null=True)
+
+    # Each user answer is associated with a particular exam
+    exam = models.ForeignKey(Exam,
+                             related_name="cid_user_answers",
+                             on_delete=models.CASCADE,
+                             null=True)
+
+    created = models.DateTimeField(auto_now_add=True)
+    updated = models.DateTimeField(auto_now=True)
+
+    def __str__(self):
+        try:
+            exam = self.exam
+        except (Exam.DoesNotExist, KeyError) as e:
+            exam = "None"
+        return "{}/{}/{}: {}".format(exam, self.cid, self.question.id,
+                                     self.answer)
+
+    def clean(self):
+        if self.answer:
+            self.answer.strip()

anatomy/static/css/anatomy.css

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+body {
+  color: gray;
+  background-color: black;
+}
+
+.answer-list {
+  font-size: 30px;
+}
+
+.answer-list .correct {
+  color: green;
+}
+
+.answer-list .half-correct {
+  color: yellow;
+}
+
+.answer-list .incorrect {
+  color: red;
+}
+
+.answer-list .not-marked {
+  color: lightblue;
+}
+
+.key {
+  font-size: 20;
+}
+
+.hide {
+  display: none;
+}
+
+.answered {
+  color: green;
+}
+
+.unanswered {
+  color: gray;
+}
+
+#question-list {
+  list-style: none;
+  float: right;
+  padding: 1px;
+  border: 1px solid gray;
+  /*max-height: 80%;*/
+  height: 100%;
+  overflow-y: scroll;
+}
+
+.flagged {
+  color: red;
+}
+
+.not-flagged {
+}
+
+button a {
+  text-decoration: none;
+  color: green;
+}
+
+#admin-link {
+  float: right;
+}
+
+.marking-list {
+  float: right;
+}
+
+.save {
+  display: inline-block;
+  padding: 0.35em 1.2em;
+  border: 0.1em solid #ffffff;
+  margin: 0 0.3em 0.3em 0;
+  border-radius: 0.12em;
+  box-sizing: border-box;
+  text-decoration: none;
+  font-family: "Roboto", sans-serif;
+  font-weight: 300;
+  color: #ffffff;
+  text-align: center;
+  transition: all 0.2s;
+  background-color: transparent;
+}
+
+.save:hover {
+  color: #000000;
+  background-color: #ffffff;
+}
+
+#stats-plot {
+  width: 50%;
+  float: right;
+}

anatomy/static/js/anatomy.js

@@ -0,0 +1,126 @@
+var dwvapp = [];
+
+var marked_answers = {
+    "correct": [],
+    "half-correct": [],
+    "incorrect": [],
+}
+
+
+$(document).ready(function () {
+    $(".answer-list li").each(function (index, element) {
+        console.log(element);
+        $(element).click(function (e) {
+
+            var classes = ['correct', 'half-correct', 'incorrect'];
+            $(element).each(function () {
+                this.className = classes[($.inArray(this.className, classes) + 1) % classes.length];
+            });
+
+            prepAnswerData();
+
+
+
+        });
+    });
+    prepAnswerData();
+
+    if($(".post-form").length > 0) {
+        $(".post-form").get(0).addEventListener("submit", function (e) {
+            if($(".not-marked").length > 0) {
+                e.preventDefault(); // before the code
+                alert("Ensure all answers are marked first");
+            }
+
+        });
+    }
+
+    if($(".dwv-container").length) {
+        $(".dwv-container").append($('<!-- DWV --> <div id="dwv"> <!-- Toolbar --> <div class="toolbar"></div> <input type="range" id="sliceRange" value="0"><!-- Layer Container --> <div class="layerContainer"> <div class="dropBox"></div> <canvas class="imageLayer">Only for HTML5 compatible browsers...</canvas> <div class="infoLayer"> <div class="infotl"></div> <div class="infotc"></div> <div class="infotr"></div> <div class="infocl"></div> <div class="infocr"></div> <div class="infobl"></div> <div class="infobc"></div> <div class="infobr" style="bottom: 64px;"></div></div></div><!-- /layerContainer -->  <!-- /dwv -->'));
+
+        var app = new dwv.App();
+        dwvapp = app;
+        //DEBUG
+        var listenerWL = function (event) {
+            console.log("event: " + event.type);
+            console.log(event);
+            $(".infotc").text(event.wc);
+        };
+        app.addEventListener("wl-width-change", listenerWL);
+        //app.addEventListener("wl-center-change", listener);
+        app.init({
+
+            "containerDivId": "dwv",
+            "fitToWindow": true,
+            "isMobile": true,
+            "gui": ["tool"],
+            "filters": ["Threshold", "Sharpen", "Sobel"],
+            "tools": ["Scroll", "WindowLevel", "ZoomAndPan"], // or try "ZoomAndPan"
+        });
+
+
+
+
+        var range = document.getElementById("sliceRange");
+        range.min = 0;
+        app.addEventListener("load-end", function () {
+            range.max = app.getImage().getGeometry().getSize().getNumberOfSlices() - 1;
+
+            if(range.max == 0) {
+                $(range).hide();
+            }
+        });
+        app.addEventListener("slice-change", function () {
+            range.value = app.getViewController().getCurrentPosition().k;
+        });
+        range.oninput = function () {
+            var pos = app.getViewController().getCurrentPosition();
+            pos.k = this.value;
+            app.getViewController().setCurrentPosition(pos);
+        }
+
+        try {
+            app.loadURLs([$(".dwv-container").data("url")]);
+        } catch(error) {
+            toastr.error(error.message);
+
+        }
+        dwv.gui.appendResetHtml(app);
+    }
+
+});
+
+function prepAnswerData() {
+    //$("#id_correct").val($("li.correct").map(function() {
+    //    ans = $(this).text();
+    //    window.marked_answers["correct"].push(ans);
+    //    return ans
+    //}).get().join('--//--'));
+    //$("#id_half_correct").val($("li.half-correct").map(function() {
+    //    ans = $(this).text();
+    //    window.marked_answers["half-correct"].push(ans);
+    //    return ans;
+    //}).get().join('--//--'));
+    //$("#id_incorrect").val($("li.incorrect").map(function() {
+    //    ans = $(this).text();
+    //    window.marked_answers["incorrect"].push(ans);
+    //    return ans;
+    //}).get().join('--//--'));
+
+    window.marked_answers["correct"] = [];
+    window.marked_answers["half-correct"] = [];
+    window.marked_answers["incorrect"] = [];
+    $("li.correct").map(function () {
+        ans = $(this).text();
+        window.marked_answers["correct"].push(ans);
+    })
+    $("li.half-correct").map(function () {
+        ans = $(this).text();
+        window.marked_answers["half-correct"].push(ans);
+    })
+    $("li.incorrect").map(function () {
+        ans = $(this).text();
+        window.marked_answers["incorrect"].push(ans);
+    })
+    $("#id_marked_answers").val(JSON.stringify(window.marked_answers));
+}

anatomy/static/js/dwv/appgui.js

@@ -0,0 +1,174 @@
+/**
+ * Application GUI.
+ */
+
+// Default window level presets.
+dwv.tool.defaultpresets = {
+    "default (127+/-255)": {"center": 127, "width": 255},
+    //"default": {"center": 127, "width": 100},
+};
+dwv.tool.defaultpresets.SC = {
+    "default (127+/-255)": {"center": 127, "width": 255},
+};
+// Default window level presets for CT.
+dwv.tool.defaultpresets.CT = {
+    "mediastinum": {"center": 40, "width": 400},
+    "lung": {"center": -500, "width": 1500},
+    "bone": {"center": 500, "width": 2000},
+};
+
+// decode query
+dwv.utils.decodeQuery = dwv.utils.base.decodeQuery;
+
+// Window
+dwv.gui.getWindowSize = function() {
+d = dwv.gui.base.getWindowSize();
+//return {"width": d["width"], "height": d["height"]+100}
+h = $(window).height() - ($(document).height()-d["height"]) - 100;
+return {"width": d["width"], "height": h}
+}
+
+// Progress
+dwv.gui.displayProgress = function (/*percent*/) { /*does nothing*/ };
+// get element
+dwv.gui.getElement = dwv.gui.base.getElement;
+// refresh
+dwv.gui.refreshElement = dwv.gui.base.refreshElement;
+// Slider
+dwv.gui.Slider = null;
+// Tags table
+dwv.gui.DicomTags = null;
+
+// Toolbox
+dwv.gui.Toolbox = function (app)
+{
+    this.setup = function (/*list*/)
+    {
+        // does nothing
+    };
+    this.display = function (/*bool*/)
+    {
+        // does nothing
+    };
+    this.initialise = function (list)
+    {
+        // not wonderful: first one should be scroll is more than one slice
+        if ( list[0] === false ) {
+            var inputScroll = app.getElement("scroll-button");
+            inputScroll.style.display = "none";
+            var inputZoom = app.getElement("zoom-button");
+            inputZoom.checked = true;
+        }
+    };
+};
+
+// Window/level
+dwv.gui.WindowLevel = function (app)
+{
+    this.setup = function ()
+    {
+        var button = document.createElement("button");
+        button.className = "wl-button";
+        button.value = "WindowLevel";
+        button.onclick = app.onChangeTool;
+        button.appendChild(document.createTextNode("Window/Level"));
+
+        var node = app.getElement("toolbar");
+        node.appendChild(button);
+    };
+    this.display = function (bool)
+    {
+        var button = app.getElement("wl-button");
+        button.disabled = bool;
+    };
+    this.initialise = function ()
+    {
+        // clear previous
+        dwv.html.removeNode(app.getElement("presetSelect"));
+        dwv.html.removeNode(app.getElement("presetLabel"));
+
+        // create preset select
+        var select = dwv.html.createHtmlSelect("presetSelect",
+            app.getViewController().getWindowLevelPresetsNames(), "wl.presets", true);
+        select.className = "presetSelect";
+        select.onchange = app.onChangeWindowLevelPreset;
+        select.title = "Select w/l preset.";
+        select.setAttribute("data-inline","true");
+        var label = document.createElement("label");
+        label.className = "presetLabel";
+        label.setAttribute("for", "presetSelect");
+        label.appendChild(document.createTextNode("Select Preset"));
+
+        var node = app.getElement("toolbar");
+        node.appendChild(label);
+        node.appendChild(select);
+    };
+};
+
+// Zoom
+dwv.gui.ZoomAndPan = function (app)
+{
+    this.setup = function ()
+    {
+        var button = document.createElement("button");
+        button.className = "zoom-button";
+        button.value = "ZoomAndPan";
+        button.onclick = app.onChangeTool;
+        button.appendChild(document.createTextNode("ZoomAndPan"));
+
+        var node = app.getElement("toolbar");
+        node.appendChild(button);
+    };
+    this.display = function (bool)
+    {
+        var button = app.getElement("zoom-button");
+        button.disabled = bool;
+    };
+};
+
+// Scroll
+dwv.gui.Scroll = function (app)
+{
+    this.setup = function ()
+    {
+        var button = document.createElement("button");
+        button.className = "scroll-button";
+        button.value = "Scroll";
+        button.onclick = app.onChangeTool;
+        button.appendChild(document.createTextNode("Scroll"));
+
+        var node = app.getElement("toolbar");
+        node.appendChild(button);
+    };
+    this.display = function (bool)
+    {
+        var button = app.getElement("scroll-button");
+        button.disabled = bool;
+    };
+};
+
+dwv.gui.Slider = dwv.gui.base.Slider;
+// NEEDS UI 
+dwv.gui.Filter = dwv.gui.base.Filter;
+
+
+// Filter: threshold
+dwv.gui.Threshold = dwv.gui.base.Threshold;
+// Filter: sharpen
+dwv.gui.Sharpen = dwv.gui.base.Sharpen;
+// Filter: sobel
+dwv.gui.Sobel = dwv.gui.base.Sobel;
+
+
+//Reset
+dwv.gui.appendResetHtml = function (app)
+{
+    var button = document.createElement("button");
+    button.className = "reset-button";
+    button.value = "reset";
+    button.onclick = app.onDisplayReset;
+    button.appendChild(document.createTextNode("Reset"));
+
+    var node = app.getElement("toolbar");
+    node.appendChild(button);
+};

anatomy/templates/anatomy/answer.html

@@ -0,0 +1,9 @@
+{% extends 'blog/base.html' %}
+
+{% block content %}
+    <h1>Answer</h1>
+    <form method="POST" class="post-form">{% csrf_token %}
+        {{ form.as_p }}
+        <button type="submit" class="save btn btn-default">Save</button>
+    </form>
+{% endblock %}

anatomy/templates/anatomy/answer_question.html

@@ -0,0 +1,13 @@
+{% extends 'anatomy/base.html' %}
+
+{% block content %}
+    <h1>Question</h1>
+    <p>{{ question.question_type.first }}</p>
+    <img src="/media/anatomy/{{ question.image|linebreaksbr }}" />
+
+    <form method="POST" class="post-form">{% csrf_token %}
+        {{ form.as_p }}
+        <button type="submit" class="save btn btn-default" formaction="/test">Previous</button>
+        <button type="submit" class="save btn btn-default" formaction="/previous">Next</button>
+    </form>
+{% endblock %}

anatomy/templates/anatomy/base.html

@@ -0,0 +1,32 @@
+{% load static %}
+<html>
+
+<head>
+    <title>Anatomy Quiz</title>
+    <link rel="stylesheet" href="{% static 'css/anatomy.css' %}">
+    <script src="https://ajax.googleapis.com/ajax/libs/jquery/3.3.1/jquery.min.js"></script>
+    <script src="{% static 'js/anatomy.js' %}"></script>
+    <script type="text/javascript" src="{% static 'js/dwv/i18next.min.js' %}"></script>
+    <script type="text/javascript" src="{% static 'js/dwv/dwv.min.js' %}"></script>
+    <script type="text/javascript" src="{% static 'js/dwv/appgui.js' %}"></script>
+
+</head>
+
+<body>
+    <div class="page-header">
+        {% if request.user.is_staff %}<span id="admin-link"><a
+                href="{% url 'admin:index' %}">Admin</a></span>{% endif %}
+    </div>
+    <div class="content container">
+        {% block navigation %}
+        {% endblock %}
+        <div class="row">
+            <div class="col-md-8">
+                {% block content %}
+                {% endblock %}
+            </div>
+        </div>
+    </div>
+</body>
+
+</html>

anatomy/templates/anatomy/exam.html

@@ -0,0 +1,79 @@
+{% extends 'anatomy/base.html' %}
+
+{% block content %}
+<script>
+
+    $(document).ready(function () {
+        $("#flagged-button").click(function () {
+
+            $.ajax({
+                url: "{% url 'anatomy:flag_question' %}",
+                data: {
+                    'pk': {{ question.pk }}
+                  },
+        dataType: 'json',
+        success: function (data) {
+            console.log(data.flagged);
+            if (data.flagged) {
+                $("#flagged-button").text("Flagged");
+                $("#flagged-button").attr("class", "flagged");
+
+            } else {
+                $("#flagged-button").text("Not Flagged");
+                $("#flagged-button").attr("class", "not-flagged");
+            }
+        }
+              });
+
+          });
+    $("#id_answer").keyup(function (event) {
+        if (event.keyCode == 13) {
+            $(".btn-default").click();
+        }
+    });
+      });
+
+
+</script>
+
+<h1>Question {{question_details.current}} of {{question_details.total}}</h1>
+<p>{{ question.question_type.first }}</p>
+<table>
+    <tr>
+        <td>
+            <div class=dwv-container data-url="{{ question.image.url}}" />
+            </div>
+
+            <form method="POST" class="post-form">{% csrf_token %}
+                {{ form.as_p }}
+                {% if question_details.current > 1 %}
+                <button type="submit" name="previous" class="btn btn-previous">Previous</button>
+                {% endif %}
+                {% if question_details.current >= question_details.total %}
+                <button type="submit" name="save" class="save btn btn-default">Save</button>
+                {% else %}
+                <button type="submit" name="next" class="save btn btn-default">Next</button>
+                {% endif %}
+                <button id=flagged-button type="button"
+                    class={% if answer.flagged == True %}flagged{% else %}not-flagged{% endif %}>{% if answer.flagged == True %}Flagged{% else %}Not
+                    Flagged{% endif %}</button>
+            </form>
+        </td>
+        <td>
+            <div class=exam-navigation />
+            <ul id=question-list>
+                {% for question in questions %}
+                <li><a class={% if question.pk in answered_questions %}answered{% else %}unanswered{% endif %}
+                        href="{% url 'exam' pk=exam.pk sk=forloop.counter0 %}">{{ forloop.counter }}{% if question.pk in flagged_questions %}!{% endif %}</a>
+                </li>
+
+
+                {% endfor %}
+            </ul>
+            </div>
+        </td>
+    </tr>
+</table>
+
+
+{% endblock %}

anatomy/templates/anatomy/exam_list.html

@@ -0,0 +1,9 @@
+{% extends 'anatomy/base.html' %}
+
+{% block content %}
+{% for exam in exams %}
+<div class="anatomy">
+    <h1><a href="{% url 'anatomy:exam_overview' pk=exam.pk %}">{{exam.name}}</a></h1>
+</div>
+{% endfor %}
+{% endblock %}

anatomy/templates/anatomy/exam_overview.html

@@ -0,0 +1,9 @@
+{% extends 'anatomy/base.html' %}
+
+{% block content %}
+<div class="anatomy">
+    <h1>{{ exam.name }}</h1>
+    This exam has {{question_number}} questions.
+    <p><button><a href="{% url 'anatomy:exam' pk=exam.pk sk=0 %}">Click here to start</a></button></p>
+</div>
+{% endblock %}

anatomy/templates/anatomy/exam_scores.html

@@ -0,0 +1,40 @@
+{% extends 'anatomy/base.html' %}
+
+{% block content %}
+<div class="anatomy">
+    <h2>{{ exam.name }}</h2>
+    {% for user, value in user_answers_marks.items %}
+    <h3>Candidate: {{ user_names|get_item:user }}</h3>
+    <!-- Answers: {{ user_answers_and_marks|get_item:user }}-->
+    Answers: {% for ans, score in user_answers_and_marks|get_item:user %}
+    {{ans}} ({{score}}),
+    {% endfor %}
+    <br /> Total mark: {{ user_scores|get_item:user }}
+    {% endfor %}
+</div>
+<div id="stats-block">
+    <h2>Stats</h2>
+    Mean: {{mean}}, Median {{median}}, Mode {{mode}}
+    <h3>Distribution of results</h3>
+    <div id="stats-plot">{{plot|safe}}</div>
+</div>
+<div>
+    <table>
+        <tr>
+            <th>Candidate ID</th>
+            <th>Score</th>
+        </tr>
+        {% for user, value in user_answers_marks.items %}
+        <tr>
+            <td>{{user}}</td>
+            <td>{{user_scores|get_item:user}}</td>
+        </tr>
+        {% endfor %}
+    </table>
+</div>
+{% endblock %}
+
+{% block navigation %}
+<a href="{% url 'anatomy:exam_list' %}">Exams</a> <a href="{% url 'anatomy:mark_overview' pk=exam.pk %}">Marking
+    overview</a> <a href="{% url 'anatomy:exam_scores_cid' pk=exam.pk %}">Scores</a>
+{% endblock %}

anatomy/templates/anatomy/index.html

@@ -0,0 +1,11 @@
+{% extends 'anatomy/base.html' %}
+
+{% block content %}
+{% for exam in exams %}
+<div class="anatomy">
+    <h1><a href="{% url 'anatomy:exam_overview' pk=exam.pk %}">Exam {{ forloop.counter }} </a></h1>
+    {% if request.user.is_staff %}<a href="{% url 'anatomy:mark' pk=exam.pk sk=0 %}">Mark answers</a>{% endif %}
+    {% if request.user.is_staff %}<a href="{% url 'anatomy:exam_scores_cid' pk=exam.pk %}">Scores</a>{% endif %}
+</div>
+{% endfor %}
+{% endblock %}

anatomy/templates/anatomy/mark.html

@@ -0,0 +1,47 @@
+{% extends 'anatomy/base.html' %}
+
+{% block content %}
+<h2>Marking question {{question_details.current}} of {{question_details.total}}</h2>
+<p>{{ question.question_type }}</p>
+
+<form method="POST" class="post-form">{% csrf_token %}
+    <div class="marking-list">Marked:
+        <ul id="marked-answer-list" class="answer-list">
+            {% for answer in question.answers.all %}
+            <li class="correct">{{ answer }} </li>
+            {% endfor %}
+            {% for answer in question.half_mark_answers.all %}
+            <li class="half-correct">{{ answer }} </li>
+            {% endfor %}
+            {% for answer in question.incorrect_answers.all %}
+            <li class="incorrect">{{ answer }} </li>
+            {% endfor %}
+        </ul>
+        Unmarked:
+        <ul id="new-answer-list" class="answer-list">
+            {% for answer in user_answers %}
+            <li class="not-marked">{{ answer }} </li>
+            {% endfor %}
+        </ul>
+        <div class="answer-list key">Key: <span class="correct">2 Marks</span>, <span class="half-correct">1
+                Mark</span>, <span class="incorrect">0 Marks</span></div>
+        {% if question_details.current > 1 %}
+        <button type="submit" name="previous" class="save btn btn-default">Previous</button>
+        {% endif %}
+        <button type="submit" name="save" class="save btn btn-default">Save</button>
+        {% if question_details.current >= question_details.total %}
+        {% else %}
+        <button type="submit" name="next" class="save btn btn-default">Next</button>
+        {% endif %}
+    </div>
+    <span class=hide>
+        {{ form.as_p }}
+    </span>
+</form>
+<div class=dwv-container data-url="/media/anatomy/{{ question.image}}" />
+</div>
+{% endblock %}
+{% block navigation %}
+<a href="{% url 'anatomy:exam_list' %}">Exams</a> <a href="{% url 'anatomy:mark_overview' pk=exam.pk %}">Marking
+    overview</a> <a href="{% url 'anatomy:exam_scores_cid' pk=exam.pk %}">Scores</a>
+{% endblock %}

anatomy/templates/anatomy/mark_overview.html

@@ -0,0 +1,20 @@
+{% extends 'anatomy/base.html' %}
+
+{% block content %}
+<div class="anatomy">
+    <h2>{{ exam.name }}</h2>
+
+    <ul>
+        {% for question in questions.all %}
+        <li><a href="{% url 'anatomy:mark' pk=exam.pk sk=forloop.counter0 %}">Question {{forloop.counter }}:
+                {{ question }}</a><br /> {{ question.GetUnmarkedAnswersString }}</li>
+        {% endfor %}
+    </ul>
+    <p><button><a href="{% url 'anatomy:mark' pk=exam.pk sk=0 %}">Click here to start marking</a></button></p>
+</div>
+{% endblock %}
+
+{% block navigation %}
+<a href="{% url 'anatomy:exam_list' %}">Exams</a> <a href="{% url 'anatomy:mark_overview' pk=exam.pk %}">Marking
+    overview</a> <a href="{% url 'anatomy:exam_scores_cid' pk=exam.pk %}">Scores</a>
+{% endblock %}

anatomy/templates/anatomy/question_detail.html

@@ -0,0 +1,14 @@
+{% extends 'anatomy/base.html' %}
+
+{% block content %}
+<div class="question">
+    <div class="date">
+        {{ question.created_date }}
+    </div>
+    <h1>{% for answer in question.answers.all %}
+        {{ answer }},
+        {% endfor %}</h1>
+    <p>{{ question.question_type.first|linebreaksbr }}</p>
+    <img src="/media/anatomy/{{ question.image|linebreaksbr }}" />
+</div>
+{% endblock %}

anatomy/templates/anatomy/question_list.html

@@ -0,0 +1,20 @@
+{% extends 'anatomy/base.html' %}
+
+{% block content %}
+{% for question in questions %}
+<div class="anatomy">
+    <div class="date">
+        {{ question.created_date }}
+    </div>
+    <h1><a href="{% url 'anatomy:question_detail' pk=question.pk %}">{% for answer in question.answers.all %}
+            {{ answer }},
+            {% endfor %}
+        </a></h1>
+    <p>{{ question.question_type.first|linebreaksbr }}</p>
+    <img src="/media/anatomy/{{ question.image|linebreaksbr }}" />
+    <a href="{% url 'anatomy:answer_question' pk=question.pk %}">ANSWER</a>
+</div>
+{% endfor %}
+{% endblock %}
+
+{$ black navigation %}

anatomy/templates/registration/login.html

@@ -0,0 +1,12 @@
+{% extends '../anatomy/base.html' %}
+
+{% block title %}Login{% endblock %}
+
+{% block content %}
+  <h2>Login</h2>
+  <form method="post">
+    {% csrf_token %}
+    {{ form.as_p }}
+    <button type="submit">Login</button>
+  </form>
+{% endblock %}

anatomy/tests.py

@@ -0,0 +1,3 @@
+from django.test import TestCase
+
+# Create your tests here.

anatomy/urls.py

@@ -0,0 +1,20 @@
+from django.urls import path, include
+from . import views
+
+app_name = "anatomy"
+
+urlpatterns = [
+    # path('', views.question_list, name='question_list'),
+    path("", views.index, name="index"),
+    path("question/<int:pk>/", views.question_detail, name="question_detail"),
+    path("question/<int:pk>/answer/", views.answer_question, name="answer_question"),
+    path("exam/<int:pk>/<int:sk>/mark", views.mark, name="mark"),
+    path("exam/<int:pk>/mark", views.mark_overview, name="mark_overview"),
+    path("exam/<int:pk>/<int:sk>/", views.exam, name="exam"),
+    path("exam/<int:pk>/", views.exam_overview, name="exam_overview"),
+    path("exam/<int:pk>/scores", views.exam_scores_cid, name="exam_scores_cid"),
+    path("exam/<int:pk>/json", views.exam_json, name="exam_json"),
+    path("submit_answers", views.postExamAnswers, name="exam_answers_submit"),
+    path("exam/", views.exam_list, name="exam_list"),
+    path("ajax/exam/flag/", views.flag_question, name="flag_question"),
+]

anatomy/views.py

@@ -0,0 +1,530 @@
+from django.shortcuts import render, get_object_or_404, redirect
+from django.views.decorators.csrf import csrf_exempt
+from django import forms
+
+# from django.contrib.auth.models import User
+from django.contrib.auth.decorators import login_required, user_passes_test
+from django.contrib.auth.models import User
+
+from django.http import Http404, JsonResponse
+
+from .forms import AnatomyAnswerForm, MarkAnatomyQuestionForm
+from .models import (
+    AnatomyQuestion,
+    CidUserAnswer,
+    Exam,
+    Answers,
+    HalfMarkAnswers,
+    IncorrectAnswers,
+)
+
+from collections import defaultdict
+import os
+import base64
+import mimetypes
+import json
+import statistics
+import plotly.express as px
+
+
+def image_as_base64(image_file):
+    """
+    :param `image_file` for the complete path of image.
+    :param `format` is format for image, eg: `png` or `jpg`.
+    """
+    # if not os.path.isfile(image_file):
+    #    return None
+
+    encoded_string = ""
+    # with open(image_file, 'rb') as img_f:
+    #    encoded_string = base64.b64encode(img_f.read())
+    encoded_string = base64.b64encode(image_file.file.read())
+    mimetype, enc = mimetypes.guess_type(image_file.path)
+    return "data:image/{};base64,{}".format(mimetype, encoded_string.decode("utf-8"))
+
+
+from django.template.defaulttags import register
+
+
+@register.filter
+def get_item(dictionary, key):
+    return dictionary.get(key)
+
+
+def user_is_admin(user):
+    if user:
+        if user.pk == 1:
+            return True
+        return False
+
+
+def question_list(request):
+    questions = AnatomyQuestion.objects.all()
+    return render(request, "anatomy/question_list.html", {"questions": questions})
+
+
+@login_required
+def index(request):
+    exams = Exam.objects.all()
+    return render(request, "anatomy/index.html", {"exams": exams})
+
+
+@login_required
+def question_detail(request, pk):
+    question = get_object_or_404(AnatomyQuestion, pk=pk)
+    return render(request, "anatomy/question_detail.html", {"question": question})
+
+
+@login_required
+def answer_question(request, pk):
+    question = get_object_or_404(AnatomyQuestion, pk=pk)
+    answer = question.user_answers.filter(
+        user=request.user
+    ).first()  # .filter(user=User)
+    if request.method == "POST":
+        if answer:
+            form = AnatomyAnswerForm(request.POST, instance=answer)
+        else:
+            form = AnatomyAnswerForm(request.POST)
+        if form.is_valid():
+            answer = form.save(commit=False)
+            answer.user = request.user
+            answer.question = question
+            # answer.published_date = timezone.now()
+            answer.save()
+            return redirect("question_detail", pk=pk)
+    else:
+        form = AnatomyAnswerForm(instance=answer)
+    return render(
+        request, "anatomy/answer_question.html", {"form": form, "question": question}
+    )
+
+
+@login_required
+def exam_list(request):
+    exams = Exam.objects.all()
+    return render(request, "anatomy/exam_list.html", {"exams": exams})
+
+
+@login_required
+def exam_overview(request, pk):
+    print(type(pk))
+    print(Exam.objects.all())
+    exams = Exam.objects.all()
+    print("test", Exam.objects.all().get(id=pk))
+    exam = get_object_or_404(Exam, pk=pk)
+    print("exam", exam)
+
+    questions = exam.exam_questions.all()
+
+    question_number = len(questions)
+
+    return render(
+        request,
+        "anatomy/exam_overview.html",
+        {"exam": exam, "questions": questions, "question_number": question_number},
+    )
+
+
+@login_required
+def exam(request, pk, sk):
+    exam = get_object_or_404(Exam, pk=pk)
+
+    questions = exam.exam_questions.all()
+
+    try:
+        question = questions[sk]
+    except IndexError:
+        raise Http404("Exam question does not exist")
+
+    n = sk
+
+    question_details = {
+        "total": len(questions),
+        "current": n + 1,
+    }
+
+    # Get data for flagged
+    # answered_questions = UserAnswer.objects.filter(user=request.user).values_list("question__pk", flat=True)
+    user_answer_data = UserAnswer.objects.filter(user=request.user).values_list(
+        "question__pk", "answer", "flagged"
+    )
+    # flagged_questions = UserAnswer.objects.filter(user=request.user, flagged=True).values_list("question__pk", flat=True)
+    # flagged_questions I= UserAnswer.filter(user=request.user, ).values_list("question__pk", flat=True)
+
+    answered_questions = set()
+    flagged_questions = set()
+    for ans_pk, answer, flagged in user_answer_data:
+        if len(answer.strip()) > 0:
+            answered_questions.add(ans_pk)
+        if flagged:
+            flagged_questions.add(ans_pk)
+
+    #    u = question.user_answers
+    answer = question.user_answers.filter(
+        user=request.user
+    ).first()  # .filter(user=User)
+    if request.method == "POST":
+        if answer:
+            form = AnatomyAnswerForm(request.POST, instance=answer)
+        else:
+            form = AnatomyAnswerForm(request.POST)
+        if form.is_valid():
+            answer = form.save(commit=False)
+            answer.user = request.user
+            answer.question = question
+            # answer.published_date = timezone.now()
+            answer.save()
+            if "next" in request.POST:
+                return redirect("exam", pk=pk, sk=n + 1)
+            elif "previous" in request.POST:
+                return redirect("exam", pk=pk, sk=n - 1)
+    else:
+        form = AnatomyAnswerForm(instance=answer)
+    return render(
+        request,
+        "anatomy/exam.html",
+        {
+            "exam": exam,
+            "form": form,
+            "question": question,
+            "question_details": question_details,
+            "questions": questions,
+            "flagged_questions": flagged_questions,
+            "answered_questions": answered_questions,
+            "answer": answer,
+        },
+    )
+
+
+def flag_question(request):
+    pk = request.GET.get("pk", None)
+    ans = UserAnswer.objects.filter(user=request.user, question__pk=pk).first()
+    ans.flagged = not ans.flagged
+    ans.save()
+    data = {"flagged": ans.flagged}
+    return JsonResponse(data)
+
+
+@csrf_exempt
+def postExamAnswers(request):
+    if request.is_ajax and request.method == "POST":
+
+        # horrible but it works
+        for k in request.POST.dict():
+            for q in json.loads(k):
+                # As access is not restricted make sure the data appears valid
+                if (not isinstance(q["cid"], int)) or (
+                    not isinstance(q["eid"], int) or (not isinstance(q["ans"], str))
+                ):
+                    return JsonResponse({"success": False})
+
+                # The model should catch invalid data but this should be less intensive
+                max_int = 10000000
+                if q["cid"] > max_int or q["eid"] > max_int:
+                    return JsonResponse({"success": False})
+
+                exiting_answers = CidUserAnswer.objects.filter(
+                    question__id=q["qid"], exam__id=q["eid"], cid=q["cid"]
+                )
+
+                if not exiting_answers:
+                    ans = UserAnswer(answer=q["ans"], cid=q["cid"])
+                    ans.question_id = q["qid"]
+                    ans.exam_id = q["eid"]
+
+                    ans.full_clean()
+
+                    ans.save()
+                else:
+                    # Update an existing answer
+                    # should never be more than one (famous last words)
+                    ans = exiting_answers[0]
+                    ans.answer = q["ans"]
+                    ans.save()
+
+                # print(UserAnswer.objects.filter(exam__id=q["eid"]))
+        # print(request.urlencode())
+
+    return JsonResponse({"success": True})
+
+    # return render(request, "anatomy/exam.html", {"exam" : exam, "question" : question})
+
+
+@login_required
+@user_passes_test(user_is_admin, login_url="/accounts/login")
+def mark_overview(request, pk):
+    exam = get_object_or_404(Exam, pk=pk)
+
+    questions = exam.exam_questions.all()
+
+    return render(
+        request, "anatomy/mark_overview.html", {"exam": exam, "questions": questions}
+    )
+
+
+@login_required
+@user_passes_test(user_is_admin, login_url="/accounts/login")
+def mark(request, pk, sk):
+    exam = get_object_or_404(Exam, pk=pk)
+
+    questions = exam.exam_questions.all()
+
+    n = sk
+
+    question_details = {
+        "total": len(questions),
+        "current": n + 1,
+    }
+
+    try:
+        question = questions[sk]
+    except IndexError:
+        raise Http404("Exam question does not exist")
+
+    correct_answers = [i.answer for i in question.answers.all()]
+    half_correct_answers = [i.answer for i in question.half_mark_answers.all()]
+    incorrect_answers = [i.answer for i in question.incorrect_answers.all()]
+
+    user_answers = (
+        set([i.answer for i in question.user_answers.all()])
+        - set(correct_answers)
+        - set(half_correct_answers)
+        - set(incorrect_answers)
+    )  # .filter(user=User)
+    user_answers = set([i for i in user_answers if i.strip() != ""])
+    if request.method == "POST":
+
+        form = MarkAnatomyQuestionForm(request.POST)
+
+        if form.is_valid():
+            cd = form.cleaned_data
+            # correct = cd.get("correct")
+            # half_correct = cd.get("half_correct")
+            # incorrect = cd.get("incorrect")
+            marked_answers = json.loads(cd.get("marked_answers"))
+
+            # This is mildly dangerous as we delete all answers
+            question.answers.all().delete()
+            question.half_mark_answers.all().delete()
+            question.incorrect_answers.all().delete()
+
+            # This should probably use json (or something else...)
+            # ajax.....
+            for ans in marked_answers["correct"]:
+                if ans.strip() == "":
+                    continue
+                print("correct", ans)
+                print(question.pk)
+                a = Answers()
+                a.question_id = question.pk
+                a.answer = ans.strip()
+                a.save()
+            # for ans in half_correct.split("--//--"):
+            for ans in marked_answers["half-correct"]:
+                if ans.strip() == "":
+                    continue
+                print("halfcorrect", ans)
+                a = HalfMarkAnswers()
+                a.question_id = question.pk
+                a.answer = ans.strip()
+                a.save()
+            for ans in marked_answers["incorrect"]:
+                if ans.strip() == "":
+                    continue
+                print("incorrect", ans)
+                a = IncorrectAnswers()
+                a.question_id = question.pk
+                a.answer = ans.strip()
+                a.save()
+            # answer = form.save(commit=False)
+            # answer.user = request.user
+            # answer.question = question
+            # answer.published_date = timezone.now()
+            # answer.save()
+            if "next" in request.POST:
+                return redirect("mark", pk=pk, sk=n + 1)
+            elif "previous" in request.POST:
+                return redirect("mark", pk=pk, sk=n - 1)
+    else:
+        form = MarkAnatomyQuestionForm()
+    return render(
+        request,
+        "anatomy/mark.html",
+        {
+            "exam": exam,
+            "form": form,
+            "question": question,
+            "question_details": question_details,
+            "user_answers": user_answers,
+        },
+    )
+
+
+def exam_json(request, pk):
+    exam = get_object_or_404(Exam, pk=pk)
+
+    questions = exam.exam_questions.all()
+
+    exam_questions = defaultdict(dict)
+
+    for q in questions:
+        exam_questions[q.id] = {
+            "title": "{}".format(q.examination),
+            "question": str(q.question_type),
+            "images": [image_as_base64(q.image)],
+            "type": "anatomy",
+        }
+
+        exam_json = {
+            "eid": exam.id,
+            "exam_type": "anatomy",
+            "exam_name": exam.name,
+            "exam_mode": True,
+            "questions": exam_questions,
+        }
+    return JsonResponse(exam_json)
+
+
+@login_required
+def exam_scores_cid(request, pk):
+    exam = get_object_or_404(Exam, pk=pk)
+
+    questions = exam.exam_questions.all()
+
+    cids = (
+        UserAnswer.objects.filter(question__in=questions)
+        .values_list("cid", flat=True)
+        .distinct()
+    )
+
+    user_answers_and_marks = defaultdict(list)
+    user_answers_marks = defaultdict(list)
+    user_answers = defaultdict(list)
+    user_names = {}
+
+    for cid in cids:
+        # Convoluted (probably...)
+        user_names[cid] = cid
+        for q in questions:
+            s = q.user_answers.filter(cid=cid)
+            if not s:
+                user_answers_marks[cid].append(0)
+                user_answers[cid].append("")
+                continue
+
+            ans = s[0].answer
+            if ans in q.answers.all().values_list("answer", flat=True):
+                a = 2
+            elif ans in q.half_mark_answers.all().values_list("answer", flat=True):
+                a = 1
+            else:
+                a = 0
+            user_answers[cid].append(ans)
+            user_answers_marks[cid].append(a)
+            user_answers_and_marks[cid].append((ans, a))
+
+    user_scores = {}
+    for user in user_answers_marks:
+        user_scores[user] = sum(user_answers_marks[user])
+
+    user_scores_list = list(user_scores.values())
+    mean = statistics.mean(user_scores_list)
+    median = statistics.median(user_scores_list)
+    try:
+        mode = statistics.mode(user_scores_list)
+    except statistics.StatisticsError:
+        mode = "No unique mode"
+
+    df = user_scores_list
+    fig = px.histogram(df, x=0)
+    fig_html = fig.to_html()
+
+    total = len(questions)
+
+    return render(
+        request,
+        "anatomy/exam_scores.html",
+        {
+            "exam": exam,
+            "questions": questions,
+            "user_answers": dict(user_answers),
+            "user_answers_marks": dict(user_answers_marks),
+            "user_scores": user_scores,
+            "user_names": user_names,
+            "user_answers_and_marks": user_answers_and_marks,
+            "mean": mean,
+            "median": median,
+            "mode": mode,
+            "plot": fig_html,
+        },
+    )
+
+
+@login_required
+def exam_scores(request, pk):
+    exam = get_object_or_404(Exam, pk=pk)
+
+    questions = exam.exam_questions.all()
+
+    users = (
+        UserAnswer.objects.filter(question__in=questions).values_list("user").distinct()
+    )
+
+    user_answers_and_marks = defaultdict(list)
+    user_answers_marks = defaultdict(list)
+    user_answers = defaultdict(list)
+    user_names = {}
+
+    for u in users:
+        # Convoluted (probably...)
+        user_names[u] = User.objects.filter(pk=u[0]).first().get_username()
+        for q in questions:
+            s = q.user_answers.filter(user__in=u)
+            if not s:
+                user_answers_marks[u].append(0)
+                user_answers[u].append("")
+                continue
+
+            ans = s[0].answer
+            if ans in q.answers.all().values_list("answer", flat=True):
+                a = 2
+            elif ans in q.half_mark_answers.all().values_list("answer", flat=True):
+                a = 1
+            else:
+                a = 0
+            user_answers[u].append(ans)
+            user_answers_marks[u].append(a)
+            user_answers_and_marks[u].append((ans, a))
+
+    user_scores = {}
+    for user in user_answers_marks:
+        user_scores[user] = sum(user_answers_marks[user])
+
+    # Users with answers
+    #
+    #    for q in questions:
+    #        answers = q.user_answers.all()
+    #
+    #        for ans in answers:
+    #            user = ans.user
+    #            if ans.answer in q.answers.all().values_list("answer", flat=True):
+    #                user_answers[user].append(2)
+    #
+
+    total = len(questions)
+
+    return render(
+        request,
+        "anatomy/exam_scores.html",
+        {
+            "exam": exam,
+            "questions": questions,
+            "user_answers": dict(user_answers),
+            "user_answers_marks": dict(user_answers_marks),
+            "user_scores": user_scores,
+            "user_names": user_names,
+            "user_answers_and_marks": user_answers_and_marks,
+        },
+    )
+

manage.py

@@ -0,0 +1,22 @@
+#!/usr/bin/env python
+import os
+import sys
+
+if __name__ == "__main__":
+    os.environ.setdefault("DJANGO_SETTINGS_MODULE", "rad.settings")
+    try:
+        from django.core.management import execute_from_command_line
+    except ImportError:
+        # The above import may fail for some other reason. Ensure that the
+        # issue is really that Django is missing to avoid masking other
+        # exceptions on Python 2.
+        try:
+            import django
+        except ImportError:
+            raise ImportError(
+                "Couldn't import Django. Are you sure it's installed and "
+                "available on your PYTHONPATH environment variable? Did you "
+                "forget to activate a virtual environment?"
+            )
+        raise
+    execute_from_command_line(sys.argv)

rad/settings.py

@@ -0,0 +1,170 @@
+"""
+Django settings for rad project.
+
+Generated by 'django-admin startproject' using Django 1.11.14.
+
+For more information on this file, see
+https://docs.djangoproject.com/en/1.11/topics/settings/
+
+For the full list of settings and their values, see
+https://docs.djangoproject.com/en/1.11/ref/settings/
+"""
+
+import os
+
+# Build paths inside the project like this: os.path.join(BASE_DIR, ...)
+BASE_DIR = os.path.dirname(os.path.dirname(os.path.abspath(__file__)))
+
+
+# Quick-start development settings - unsuitable for production
+# See https://docs.djangoproject.com/en/1.11/howto/deployment/checklist/
+
+# SECURITY WARNING: keep the secret key used in production secret!
+with open('/etc/secret_key') as f:
+    SECRET_KEY = f.read().strip()
+
+# SECURITY WARNING: don't run with debug turned on in production!
+DEBUG = True
+
+ALLOWED_HOSTS = ["localhost", "127.0.0.1", "161.35.163.87"]
+
+
+# Application definition
+
+INSTALLED_APPS = [
+    'anatomy',
+    #"tagulous",
+    "reversion",
+    "django_tables2",
+    "django_filters",
+    "easy_thumbnails",
+    "filer",
+    "mptt",
+    'django.contrib.admin',
+    'django.contrib.auth',
+    'django.contrib.contenttypes',
+    'django.contrib.sessions',
+    'django.contrib.messages',
+    'django.contrib.staticfiles',
+]
+
+MIDDLEWARE = [
+    "corsheaders.middleware.CorsMiddleware",
+    "django.middleware.security.SecurityMiddleware",
+    "django.contrib.sessions.middleware.SessionMiddleware",
+    "django.middleware.common.CommonMiddleware",
+    "django.middleware.csrf.CsrfViewMiddleware",
+    "django.contrib.auth.middleware.AuthenticationMiddleware",
+    "django.contrib.messages.middleware.MessageMiddleware",
+    "django.middleware.clickjacking.XFrameOptionsMiddleware",
+    "reversion.middleware.RevisionMiddleware",
+]
+
+ROOT_URLCONF = 'rad.urls'
+
+TEMPLATES = [
+    {
+        "BACKEND": "django.template.backends.django.DjangoTemplates",
+        "DIRS": [os.path.join(BASE_DIR, "templates")],
+        "APP_DIRS": True,
+        "OPTIONS": {
+            "context_processors": [
+                "django.template.context_processors.debug",
+                "django.template.context_processors.request",
+                "django.contrib.auth.context_processors.auth",
+                "django.contrib.messages.context_processors.messages",
+                "django.template.context_processors.static",
+            ],
+        },
+    },
+]
+
+WSGI_APPLICATION = 'rad.wsgi.application'
+
+
+# Database
+# https://docs.djangoproject.com/en/1.11/ref/settings/#databases
+
+DATABASES = {
+    'default': {
+        "ENGINE": "django.db.backends.postgresql",
+        "NAME": "rad",
+        "USER": "django",
+        "PASSWORD": "f7bf31dc9bda1256ea827953480d1917",
+        #"HOST": "xkjq.uk",
+        "HOST": "161.35.163.87",
+        "PORT": "5432",
+    }
+}
+
+
+# Password validation
+# https://docs.djangoproject.com/en/1.11/ref/settings/#auth-password-validators
+
+AUTH_PASSWORD_VALIDATORS = [
+    {
+        'NAME': 'django.contrib.auth.password_validation.UserAttributeSimilarityValidator',
+    },
+    {
+        'NAME': 'django.contrib.auth.password_validation.MinimumLengthValidator',
+    },
+    {
+        'NAME': 'django.contrib.auth.password_validation.CommonPasswordValidator',
+    },
+    {
+        'NAME': 'django.contrib.auth.password_validation.NumericPasswordValidator',
+    },
+]
+
+
+SERIALIZATION_MODULES = {
+    "xml": "tagulous.serializers.xml_serializer",
+    "json": "tagulous.serializers.json",
+    "python": "tagulous.serializers.python",
+    "yaml": "tagulous.serializers.pyyaml",
+}
+
+# Internationalization
+# https://docs.djangoproject.com/en/1.11/topics/i18n/
+
+LANGUAGE_CODE = 'en-us'
+
+TIME_ZONE = 'UTC'
+
+USE_I18N = True
+
+USE_L10N = True
+
+USE_TZ = True
+
+
+# Static files (CSS, JavaScript, Images)
+# https://docs.djangoproject.com/en/1.11/howto/static-files/
+
+STATIC_URL = '/static/'
+
+
+# Redirect to home URL after login (Default redirects to /accounts/profile/)
+LOGIN_REDIRECT_URL = "/"
+
+TAGULOUS_AUTOCOMPLETE_JS = (
+    "tagulous/lib/jquery.js",
+    "tagulous/lib/select2-3/select2.min.js",
+    "tagulous/tagulous.js",
+    "tagulous/adaptor/select2-3.js",
+)
+
+TAGULOUS_AUTOCOMPLETE_CSS = {"all": ["tagulous/lib/select2-3/select2.css"]}
+
+INTERNAL_IPS = ["localhost", "127.0.0.1"]
+
+LOGGING = {
+    "version": 1,
+    "disable_existing_loggers": False,
+    "incremental": True,
+    "root": {
+        "level": "DEBUG",
+    },
+}
+
+CORS_ORIGIN_ALLOW_ALL = True

rad/urls.py

@@ -0,0 +1,45 @@
+"""mysite URL Configuration
+
+The `urlpatterns` list routes URLs to views. For more information please see:
+    https://docs.djangoproject.com/en/2.0/topics/http/urls/
+Examples:
+Function views
+    1. Add an import:  from my_app import views
+    2. Add a URL to urlpatterns:  path('', views.home, name='home')
+Class-based views
+    1. Add an import:  from other_app.views import Home
+    2. Add a URL to urlpatterns:  path('', Home.as_view(), name='home')
+Including another URLconf
+    1. Import the include() function: from django.urls import include, path
+    2. Add a URL to urlpatterns:  path('blog/', include('blog.urls'))
+"""
+from django.contrib import admin
+from django.urls import path, include
+from django.conf import settings
+from django.conf.urls.static import static
+from django.views.generic import TemplateView
+
+urlpatterns = [
+    path("admin/", admin.site.urls, name="admin"),
+    path("anatomy/", include("anatomy.urls"), name="anatomy"),
+    #path("sbas/", include("sbas.urls"), name="sbas"),
+    #path("rapids/", include("rapids.urls"), name="rapids"),
+    path("accounts/", include("django.contrib.auth.urls")),
+    path("", TemplateView.as_view(template_name="index.html"), name="home"),
+
+]
+
+urlpatterns += static(settings.MEDIA_URL, document_root=settings.MEDIA_ROOT)
+
+if settings.DEBUG:
+    urlpatterns += static(settings.MEDIA_URL,
+                          document_root=settings.MEDIA_ROOT)
+    urlpatterns += static(settings.STATIC_URL,
+                          document_root=settings.STATIC_ROOT)
+    import debug_toolbar
+
+    urlpatterns = [
+        path("__debug__/", include(debug_toolbar.urls)),
+        # For django versions before 2.0:
+        # url(r'^__debug__/', include(debug_toolbar.urls)),
+    ] + urlpatterns

rad/wsgi.py

@@ -0,0 +1,16 @@
+"""
+WSGI config for rad project.
+
+It exposes the WSGI callable as a module-level variable named ``application``.
+
+For more information on this file, see
+https://docs.djangoproject.com/en/1.11/howto/deployment/wsgi/
+"""
+
+import os
+
+from django.core.wsgi import get_wsgi_application
+
+os.environ.setdefault("DJANGO_SETTINGS_MODULE", "rad.settings")
+
+application = get_wsgi_application()

requirements.txt

@@ -0,0 +1,13 @@
+Django
+django_debug_toolbar
+django_jquery
+django_reversion
+django_tagulous
+Pillow
+django-cors-headers
+plotly
+pandas
+django-tables2
+django-filter
+django-filer
+psycopg2-binary

templates/base.html

@@ -0,0 +1,28 @@
+{% load static %}
+<html>
+
+<head>
+    <title>Radiology Stuff</title>
+    <link rel="stylesheet" href="{% static 'css/anatomy.css' %}">
+    <script src="https://ajax.googleapis.com/ajax/libs/jquery/3.3.1/jquery.min.js"></script>
+
+</head>
+
+<body>
+    <div class="page-header">
+        {% if request.user.is_staff %}<span id="admin-link"><a
+                href="{% url 'admin:index' %}">Admin</a></span>{% endif %}
+    </div>
+    <div class="content container">
+        {% block navigation %}
+        {% endblock %}
+        <div class="row">
+            <div class="col-md-8">
+                {% block content %}
+                {% endblock %}
+            </div>
+        </div>
+    </div>
+</body>
+
+</html>

templates/index.html

@@ -0,0 +1,11 @@
+{% extends 'base.html' %}
+
+{% block content %}
+<div class="anatomy">
+        <h1>Radiology Stuff</h1>
+        <a href="{% url 'anatomy:index'%}">Anatomy</a>
+        <a href="{% url 'login'%}">Log in</a>
+        {% if request.user.is_staff %}<a href="{% url 'admin:index'%}">Admin</a>{% endif %}
+        <a href="{% url 'password_reset'%}">Reset password</a>
+</div>
+{% endblock %}