add question schema model and integrate most urls/views

atlas/filters.py

@@ -7,6 +7,7 @@ from .models import (
     Finding,
     PathologicalProcess,
     Presentation,
+    QuestionSchema,
     Series,
     Structure,
     Subspecialty,
@@ -282,3 +283,8 @@ class SubspecialtyFilter(django_filters.FilterSet):
             data=data, queryset=queryset, prefix=prefix, request=request
         )
         pass
+
+class QuestionSchemaFilter(django_filters.FilterSet):
+    class Meta:
+        model = QuestionSchema
+        fields = ("name", "description")

atlas/forms.py

@@ -27,6 +27,7 @@ from atlas.models import (
     CidReportAnswer,
     Differential,
     Finding,
+    QuestionSchema,
     Resource,
     SelfReview,
     Series,
@@ -528,10 +529,11 @@ class JsonAnswerForm(Form):
     class Meta:
         fields = ["json_answer"]
 
-    def __init__(self, *args, case_detail,  **kwargs):
+    def __init__(self, *args, question_schema=None,  **kwargs):
         super(JsonAnswerForm, self).__init__(*args, **kwargs)
-        if case_detail.question_schema is not None:
-            self.fields["json_answer"] = JSONSchemaField(schema=case_detail.question_schema, options='schema/options.json')
+        if question_schema is not None:
+            self.fields["json_answer"] = JSONSchemaField(schema=question_schema, options='schema/options.json')
+            self.fields["json_answer"].label = False
 
 class BaseReportAnswerForm(ModelForm):
     class Meta:
@@ -769,3 +771,13 @@ class CaseDetailForm(ModelForm):
             "question_schema": SvelteJSONEditorWidgetOverride(),
             "question_answers": SvelteJSONEditorWidgetOverride(),
         }
+
+
+class QuestionSchemaForm(ModelForm):
+    class Meta:
+        model = QuestionSchema
+        fields = ["name", "description", "schema"]
+
+        widgets = {
+            "schema": SvelteJSONEditorWidgetOverride(),
+        }

atlas/migrations/0055_questionschema.py

@@ -0,0 +1,24 @@
+# Generated by Django 5.0.2 on 2024-06-24 09:27
+
+import generic.mixins
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ('atlas', '0054_casecollection_feedback_once_collection_complete_and_more'),
+    ]
+
+    operations = [
+        migrations.CreateModel(
+            name='QuestionSchema',
+            fields=[
+                ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
+                ('name', models.CharField(max_length=255)),
+                ('description', models.TextField(blank=True, null=True)),
+                ('schema', models.JSONField()),
+            ],
+            bases=(models.Model, generic.mixins.AuthorMixin),
+        ),
+    ]

atlas/models.py

@@ -74,6 +74,7 @@ from django.core.validators import MaxValueValidator, MinValueValidator
 from loguru import logger
 
 
+
 image_storage = FileSystemStorage(
     # Physical file location ROOT
     location="{0}atlas/".format(settings.MEDIA_ROOT),
@@ -1272,3 +1273,25 @@ class CaseResource(models.Model):
 
     def __str__(self) -> str:
         return f"{self.resource} - {self.case} (Pre: {self.pre_review})"
+
+
+class QuestionSchema(models.Model, AuthorMixin):
+    name = models.CharField(max_length=255)
+    description = models.TextField(blank=True, null=True)
+    schema = models.JSONField()
+
+    def get_absolute_url(self):
+        return reverse("atlas:question_schema_detail", kwargs={"pk": self.pk})
+    
+    def get_example_form(self):
+        from .forms import JsonAnswerForm
+        example_form = JsonAnswerForm(
+            question_schema=self.schema
+        )
+        return example_form
+
+    def get_schema_as_json(self) -> str:
+        return json.dumps(self.schema)
+
+    def __str__(self) -> str:
+        return "{}".format(self.name)

atlas/tables.py

@@ -9,6 +9,7 @@ from .models import (
     Condition,
     PathologicalProcess,
     Presentation,
+    QuestionSchema,
     Series,
     Structure,
     Finding,
@@ -338,3 +339,24 @@ class CaseCollectionTable(tables.Table):
             *args,
             **kwargs,
         )
+
+class QuestionSchemaTable(tables.Table):
+    name = tables.Column(
+        linkify=("atlas:question_schema_detail", {"pk": tables.A("pk")}),
+        verbose_name="QuestionSchema",
+    )
+
+    edit = tables.LinkColumn(
+        "atlas:question_schema_update", text="Edit", args=[A("pk")], orderable=False
+    )
+    delete = tables.LinkColumn(
+        "atlas:question_schema_delete", text="Delete", args=[A("pk")], orderable=False
+    )
+
+    class Meta:
+        model = QuestionSchema
+        template_name = "django_tables2/bootstrap4.html"
+        fields = ("name", "description", "schema")
+
+    def render_schema(self, value, record):
+        return format_html("<details><summary>Schema</summary>{}</details>", value)

atlas/templates/atlas/base.html

@@ -16,6 +16,7 @@
         <a href="{% url 'atlas:series_create' %}" title="Create a new image series">Create Series</a> /
         <a href="{% url 'atlas:resource_view' %}" title="Resources">Resources</a> /
         <a href="{% url 'atlas:user_uploads' %}" title="View unimported uploads">Uploads</a> /
+        <a href="{% url 'atlas:question_schema_overview' %}" title="View and edit question schemas">Question Schemas</a> /
         <a href="{% url 'atlas:help' %}" title="View the atlas help pages">Help</a>
     {% endif %}
     {% comment %} </br>

atlas/templates/atlas/collection_case_detail.html

@@ -29,7 +29,7 @@
             hx-target=".offcanvas-body"
     >Collection questions</button>
     <button class="btn btn-primary btn-sm" type="button" data-bs-toggle="offcanvas" data-bs-target="#offcanvasRight" aria-controls="offcanvasRight"
-            hx-get="{% url 'atlas:question_schemas_preset' %}"
+            hx-get="{% url 'atlas:question_schema_schemas' %}"
             hx-target=".offcanvas-body"
     >Preset questions</button>
 

atlas/templates/atlas/question_schema_detail.html

@@ -0,0 +1,24 @@
+{% extends 'atlas/base.html' %}
+
+{% block content %}
+
+
+
+    <div>
+        <h3>Name: {{question_schema.name}}</h3>
+        <p>Description: {{question_schema.description}}</p>
+
+        <details><summary>JSON:</summary>{{question_schema.schema}}</details>
+
+        {{example_form}}
+
+        <a href='{% url "atlas:question_schema_update" pk=question_schema.pk %}'><button>Edit</button></a>
+        <a href='{% url "atlas:question_schema_delete" pk=question_schema.pk %}'><button>Delete</button></a>
+
+    </div>
+
+{% endblock %}
+
+{% block js %}
+{{example_form.media}}
+{% endblock %}

atlas/templates/atlas/question_schemas_preset.html

@@ -3,12 +3,12 @@
 {% comment %} <script src="{% static 'js/jquery-3.7.1.min.js' %}"></script>
 <script src="https://cdn.jsdelivr.net/npm/@json-editor/json-editor@latest/dist/jsoneditor.min.js"></script> {% endcomment %}
 <ol>
-    {% for schema in schemas %}
+    {% for question_schema in question_schemas %}
 
         <li class="schemas">
             <button class="btn btn-sm btn-secondary use-layout">Use schema</button>
-            <details><summary>Schema:</summary>
-                <div class="schema" data-schema='{{schema|safe}}'>{{schema}}</div>
+            <details><summary>{{question_schema.name}}</summary>
+                <div class="schema" data-schema='{{question_schema.get_schema_as_json|safe}}'>{{question_schema.schema}}</div>
             </details>
             <div class="form"></div>
 

atlas/templates/atlas/questionschema_form.html

@@ -0,0 +1,24 @@
+{% extends "atlas/base.html" %}
+<!-- {% load static from static %} -->
+
+{% block css %}
+{% endblock %}
+{% block js %}
+    <!--<script type="text/javascript" src="/admin/jsi18n/"></script>-->
+    {{form.media}}
+
+    <script type="text/javascript">
+    </script>
+
+    <!-- {{ form.media }} -->
+{% endblock %}
+{% block content %}
+    <h2>Add/Edit Condition</h2>
+    <p>Use this form to create or edit a question schema.</p>
+    <form action="" method="post" enctype="multipart/form-data" id="condition-form">
+        {% csrf_token %}
+
+        {{ form.as_div }}
+        <input type="submit" class="submit-button" value="Submit" name="submit">
+    </form>
+{% endblock %}

atlas/urls.py

@@ -121,11 +121,11 @@ urlpatterns = [
         views.collection_question_schemas,
         name="collection_question_schemas",
     ),
-    path(
-        "question_schemas_preset",
-        views.question_schemas_preset,
-        name="question_schemas_preset",
-    ),
+    #path(
+    #    "question_schemas_preset",
+    #    views.question_schemas_preset,
+    #    name="question_schemas_preset",
+    #),
     path(
         "collection/<int:exam_id>/cids/<int:cid>/delete_answers",
         views.delete_collection_cid_answers,
@@ -218,7 +218,12 @@ urlpatterns = [
         name="series_dicom_json",
     ),
     path("uncategorised_dicoms/", views.uncategorised_dicoms, name="uncategorised_dicoms_view"),
-
+    path("question_schema/", views.QuestionSchemaView.as_view(), name="question_schema_overview"),
+    path("question_schema/<int:pk>", views.question_schema_detail, name="question_schema_detail"),
+    path("question_schema/<int:pk>/update", views.QuestionSchemaUpdate.as_view(), name="question_schema_update"),
+    path("question_schema/<int:pk>/delete", views.QuestionSchemaDelete.as_view(), name="question_schema_delete"),
+    path("question_schema/create", views.QuestionSchemaCreate.as_view(), name="question_schema_create"),
+    path("question_schema/schemas", views.question_schema_schemas, name="question_schema_schemas"),
     path("condition/", views.ConditionView.as_view(), name="condition_view"),
     path("categories/", views.categories_list, name="categories_list"),
     path("condition/<int:pk>", views.condition_detail, name="condition_detail"),

atlas/views.py

@@ -49,6 +49,7 @@ from .forms import (
     ConditionForm,
     FindingForm,
     JsonAnswerForm,
+    QuestionSchemaForm,
     ResourceForm,
     SelfReviewForm,
     SeriesAuthorForm,
@@ -70,6 +71,7 @@ from .models import (
     Differential,
     PathologicalProcess,
     Presentation,
+    QuestionSchema,
     Resource,
     SelfReview,
     Series,
@@ -89,6 +91,7 @@ from .tables import (
     FindingTable,
     PathologicalProcessTable,
     PresentationTable,
+    QuestionSchemaTable,
     SeriesTable,
     StructureTable,
     SubspecialtyTable,
@@ -100,6 +103,7 @@ from .filters import (
     FindingFilter,
     PathologicalProcessFilter,
     PresentationFilter,
+    QuestionSchemaFilter,
     SeriesFilter,
     StructureFilter,
     SubspecialtyFilter,
@@ -224,6 +228,33 @@ def series_detail(request, pk, finding_pk=None):
     )
 
 
+@login_required
+# @user_is_atlas_editor
+def question_schema_detail(request, pk: int):
+    question_schema = get_object_or_404(QuestionSchema, pk=pk)
+
+    example_form = question_schema.get_example_form()
+
+    # logging.debug(atlas.subspecialty.first().name.all())
+    return render(
+        request,
+        "atlas/question_schema_detail.html",
+        {"question_schema": question_schema, "example_form": example_form},
+    )
+
+@login_required
+# @user_is_atlas_editor
+def question_schema_schemas(request):
+    question_schemas = QuestionSchema.objects.all()
+
+    return render(
+        request,
+        "atlas/question_schemas_preset.html",
+        {
+            "question_schemas": question_schemas,
+        },
+    )
+
 @login_required
 # @user_is_atlas_editor
 def condition_detail(request, pk):
@@ -823,6 +854,18 @@ class ConditionCreate(RevisionMixin, LoginRequiredMixin, CreateView):
     form_class = ConditionForm
 
 
+class QuestionSchemaCreate(LoginRequiredMixin, CreateView):
+    model = QuestionSchema
+    form_class = QuestionSchemaForm
+
+class QuestionSchemaUpdate(LoginRequiredMixin, UpdateView):
+    model = QuestionSchema
+    form_class = QuestionSchemaForm
+
+class QuestionSchemaDelete(AuthorOrCheckerRequiredMixin, DeleteView):
+    model = QuestionSchema
+    template_name = "confirm_delete.html"
+
 class FindingUpdate(RevisionMixin, LoginRequiredMixin, UpdateView):
     model = Finding
     form_class = FindingForm
@@ -1141,6 +1184,14 @@ class ConditionView(LoginRequiredMixin, SingleTableMixin, FilterView):
     filterset_class = ConditionFilter
 
 
+class QuestionSchemaView(LoginRequiredMixin, SingleTableMixin, FilterView):
+    model = QuestionSchema
+    table_class = QuestionSchemaTable
+    template_name = "atlas/view.html"
+
+    filterset_class = QuestionSchemaFilter
+
+
 class SubspecialtyView(LoginRequiredMixin, SingleTableMixin, FilterView):
     model = Subspecialty
     table_class = SubspecialtyTable
@@ -1484,8 +1535,17 @@ class CollectionView(LoginRequiredMixin, SingleTableMixin, FilterView):
 def collection_viva(request, pk):
     collection = get_object_or_404(CaseCollection, pk=pk)
 
-    cases = collection.cases.all().order_by("casedetail__sort_order").prefetch_related("series", "series__images", "series__contrast", "series__plane", "series__examination")
-
+    cases = (
+        collection.cases.all()
+        .order_by("casedetail__sort_order")
+        .prefetch_related(
+            "series",
+            "series__images",
+            "series__contrast",
+            "series__plane",
+            "series__examination",
+        )
+    )
 
     return render(
         request,
@@ -1588,7 +1648,9 @@ def collection_case_details(request, exam_id, case_id):
             # answers = request.POST
             case_detail.question_answers = json.loads(request.POST.get("json_answer"))
             case_detail.save()
-            example_form = JsonAnswerForm(request.POST, case_detail=case_detail)
+            example_form = JsonAnswerForm(
+                request.POST, question_schema=case_detail.question_schema
+            )
             form = CaseDetailForm(instance=case_detail)
         # Called if the user saves the main form
         elif request.POST.get("submit") == "save":
@@ -1596,7 +1658,7 @@ def collection_case_details(request, exam_id, case_id):
             if form.is_valid():
                 form.save()
                 # Add any additional logic or redirection here
-            # example_form = JsonAnswerForm(request.POST, case_detail=case_detail)
+            # example_form = JsonAnswerForm(request.POST, question_schema=case_detail.question_schema)
             post_data = request.POST.copy()
             if (
                 case_detail.question_schema is not None
@@ -1618,7 +1680,9 @@ def collection_case_details(request, exam_id, case_id):
                 post_data["json_answer"] = json.dumps(answers)
                 case_detail.question_answers = answers
                 case_detail.save()
-            example_form = JsonAnswerForm(post_data, case_detail=case_detail)
+            example_form = JsonAnswerForm(
+                post_data, question_schema=case_detail.question_schema
+            )
 
             form = CaseDetailForm(instance=case_detail)
         # This shouldn't happen
@@ -1629,7 +1693,9 @@ def collection_case_details(request, exam_id, case_id):
     else:
         post_data = request.POST.copy()
         post_data["json_answer"] = json.dumps(case_detail.question_answers)
-        example_form = JsonAnswerForm(post_data, case_detail=case_detail)
+        example_form = JsonAnswerForm(
+            post_data, question_schema=case_detail.question_schema
+        )
 
         form = CaseDetailForm(instance=case_detail)
         pass
@@ -1652,17 +1718,18 @@ def collection_case_details(request, exam_id, case_id):
         #    post_data = request.POST.copy()
         #    post_data["json_answer"]= json.dumps(answers)
         #    case_detail.question_answers =  answers
-        # example_form = JsonAnswerForm(post_data, case_detail=case_detail)
+        # example_form = JsonAnswerForm(post_data, question_schema=case_detail.question_schema)
 
         # form = CaseDetailForm(instance=case_detail)
 
-    # blank_form = JsonAnswerForm(case_detail=case_detail)
-    case_number, case_count = collection.get_index_of_case(case_detail.case, case_count=True)
+    # blank_form = JsonAnswerForm(question_schema=case_detail.question_schema)
+    case_number, case_count = collection.get_index_of_case(
+        case_detail.case, case_count=True
+    )
 
     previous = collection.get_previous_case(case_detail.case)
     next = collection.get_next_case(case_detail.case)
 
-
     return render(
         request,
         "atlas/collection_case_detail.html",
@@ -1983,7 +2050,6 @@ def collection_case_view_take(
                 ).first()
                 ReportAnswerForm = UserQuestionAnswerForm
 
-
     if request.method == "POST":
         if collection.collection_type in ("REP", "QUE"):
             if not collection.publish_results: