Add "View as viva" option to collection actions dropdown

atlas/filters.py

@@ -21,6 +21,7 @@ from .models import (
 )
 from django.contrib.auth.models import User
 from django.db.models import Q
+from django.http import QueryDict
 
 
 def get_authors(request):
@@ -85,6 +86,22 @@ class CaseCollectionFilter(django_filters.FilterSet):
         user=None,
         request=None,
     ):
+        # Default the archive filter to False when not provided so collections
+        # are not archived by default in listings.
+        if data is None:
+            data = QueryDict('', mutable=True)
+            data['archive'] = 'false'
+        else:
+            # QueryDict instances need to be copied to be mutable
+            try:
+                if 'archive' not in data:
+                    data = data.copy()
+                    data['archive'] = 'false'
+            except Exception:
+                # Fallback for non-QueryDict mappings
+                if isinstance(data, dict) and 'archive' not in data:
+                    data = dict(data)
+                    data['archive'] = 'false'
         if not request.user.groups.filter(name="atlas_editor").exists():
             queryset = queryset.prefetch_related("author").filter(
                 author__id=request.user.id

atlas/models.py

@@ -720,11 +720,20 @@ class Case(models.Model, AuthorMixin, QuestionMixin):
 
         series_qs = self.series.all()
         if exclude_series_ids is not None:
-            series_qs = self.series.exclude(id__in=exclude_series_ids)
-        images = [
-            [image.image.url for image in series.images.all()]
-            for series in series_qs.order_by('seriesdetail__sort_order').prefetch_related('images')
-        ]
+            series_qs = series_qs.exclude(id__in=exclude_series_ids)
+
+        # Ensure series are ordered by the through model sort_order
+        series_list = list(series_qs.order_by('seriesdetail__sort_order').prefetch_related('images'))
+
+        images = []
+        for series in series_list:
+            # If images were prefetched, use the cached list and filter in Python
+            prefetched = getattr(series, '_prefetched_objects_cache', {}).get('images')
+            if prefetched is not None:
+                imgs = [img.image.url for img in prefetched if not getattr(img, 'removed', False)]
+            else:
+                imgs = [image.image.url for image in series.images.filter(removed=False)]
+            images.append(imgs)
 
         if as_json:
             return json.dumps(images)
@@ -1039,6 +1048,27 @@ class Series(SeriesBase):
         else:
             return f"{self.examination} ({self.plane})"
     
+    def user_can_edit(self, user, allow_if_can_edit_cases=True) -> bool:
+        """Check if the user can edit the series.
+
+        Args:
+            user (User): The user to check.
+        Returns:
+            bool: True if the user can edit the series, False otherwise.
+        """
+        if user.is_superuser:
+            return True
+
+        if self.author.filter(id=user.id).exists():
+            return True
+
+        if allow_if_can_edit_cases:
+            # Check if user can edit any of the cases this series is in
+            for case in self.case.all():
+                if case.check_user_can_edit(user):
+                    return True
+        return False
+
     def get_full_str(self):
         if self.case:
             case_id = ", ".join([str(case) for case in self.case.all()])

atlas/templates/atlas/case_display_block.html

@@ -316,7 +316,6 @@
 
     <!-- Series Findings -->
                         <h5>Series Findings</h5>
-                        {% if case.ordered_series %}
                         {% for series in case.ordered_series %}
                             {% for finding in series.findings.all %}
                                 <div class="finding-box" id="finding-box-{{ finding.pk }}" data-series="{{ series.pk }}">
@@ -356,14 +355,12 @@
                                     {% endif %}
                                 </div>
                             {% endfor %}
-                            {% endfor %}
-                        {% else %}
+                        {% empty%}
                             No series associated with case.
-                        {% endif %}
+                        {% endfor %}
 
     <!-- Case Display Sets -->
                         <h5 class="mt-3">Case Display Sets</h5>
-                        {% if case.display_sets %}
                         <ul class="list-group">
                             {% for ds in case.display_sets.all %}
                                 <li class="list-group-item">
@@ -425,11 +422,10 @@
                                         </details>
                                     </div>
                                 </li>
+                            {% empty %}
+                                <span class="text-muted">No display sets for this case.</span>
                             {% endfor %}
                         </ul>
-                        {% else %}
-                            <span class="text-muted">No display sets for this case.</span>
-                        {% endif %}
                     </details>
                 </div>
                 <div>
@@ -804,7 +800,7 @@
                             dsModalBody.innerHTML = html;
                             setTimeout(function () {
                                 try { window.mountDicomViewers(); } catch (e) { console.warn('mountDicomViewers not available', e); }
-                            }, 200);
+                            }, 500);
                         })
                         .catch(error => {
                             console.error("Error loading display set details:", error);

atlas/templates/atlas/case_displayset_modal.html

@@ -1,18 +1,26 @@
 <div class="case-displayset-modal">
     <div class="mb-3">
         <h5>{{ ds.name }}</h5>
+        {% if can_edit %}
+            <a href="{% url 'atlas:case_displaysets' ds.case.pk %}?displayset={{ ds.pk }}&edit=true" class="btn btn-sm btn-outline-secondary ms-2">Edit display set</a>
+        {% endif %}
         {% if ds.description %}
             <div class="text-muted">{{ ds.description }}</div>
         {% endif %}
     </div>
 
+    {# Viewer area for the modal - mounted by rad/static/dv3d bundle #}
+    <div class="mb-3">
+        <div id="modal_viewer_{{ ds.pk }}" class="dicom-viewer-root" style="height:420px;" data-auto-cache-stack="false" data-annotationjson="{{ ds.annotations }}" data-viewerstate="{{ ds.viewerstate }}"></div>
+    </div>
+
     {% if ds.viewerstate and ds.annotations %}
         <div class="mb-3">
             <button
                 type="button"
                 class="btn btn-primary"
-                onclick='importAnnotations_main_viewer({{ ds.annotations|safe }}); importViewerState_main_viewer({{ ds.viewerstate|safe }});'
-            >Load into viewer</button>
+                onclick='(window.importAnnotations_modal_viewer_{{ ds.pk }}||window.importAnnotations_modal_viewer||window.importAnnotations)({{ ds.annotations|safe }}); (window.importViewerState_modal_viewer_{{ ds.pk }}||window.importViewerState_modal_viewer||window.importViewerState)({{ ds.viewerstate|safe }});'
+            >Reload display set</button>
         </div>
     {% endif %}
 

atlas/templates/atlas/collection_detail.html

@@ -19,6 +19,12 @@
                         <h2 class="card-title mb-2">{{ collection.name }}</h2>
 
                         {% include 'exam_notes.html' %}
+                        {% if casesdetails|length > 20 %}
+                            <div id="collection-warning-{{ collection.pk }}" class="alert alert-warning alert-dismissible fade show" role="alert">
+                                <strong>Performance warning:</strong> This collection contains {{ casesdetails|length }} cases — in some situations this may adversely affect performance, all features will still work but page loading may be slower. Consider splitting into smaller collections if performance is an issue.
+                                <button id="collection-warning-close-{{ collection.pk }}" type="button" class="btn-close" data-bs-dismiss="alert" aria-label="Close"></button>
+                            </div>
+                        {% endif %}
 
                         <p class="mb-1">
                         </p>
@@ -158,4 +164,25 @@
         </div>
     </div>
 
+
+    <script>
+        document.addEventListener('DOMContentLoaded', function() {
+            try {
+                var pk = '{{ collection.pk }}';
+                var key = 'collection_warning_dismissed_' + pk;
+                var alertEl = document.getElementById('collection-warning-' + pk);
+                if (!alertEl) return;
+                if (localStorage.getItem(key) === '1') {
+                    alertEl.remove();
+                    return;
+                }
+                var btn = document.getElementById('collection-warning-close-' + pk);
+                if (btn) {
+                    btn.addEventListener('click', function() {
+                        try { localStorage.setItem(key, '1'); } catch (e) { /* ignore */ }
+                    });
+                }
+            } catch (e) { console.warn('collection warning persistence error', e); }
+        });
+    </script>
 {% endblock %}

atlas/templates/atlas/collection_headers.html

@@ -28,6 +28,8 @@
                         <li><a class="dropdown-item" href="{% url 'atlas:collection_authors' collection.pk %}">Authors</a></li>
                         <li><hr class="dropdown-divider"></li>
                                     <li><a class="dropdown-item text-danger" href="{% url 'atlas:exam_deleted' collection.id %}">Delete</a></li>
+                        <li><hr class="dropdown-divider"></li>
+                        <li><a class="dropdown-item" href="{% url 'atlas:collection_viva' collection.pk %}">View as viva</a></li>
                         {% if request.user.is_superuser %}
                             <li><hr class="dropdown-divider"></li>
                             <li><a class="dropdown-item" href="{% url 'admin:atlas_casecollection_change' collection.id %}">Admin Edit</a></li>

atlas/templates/atlas/partials/case_list_item.html

@@ -13,10 +13,10 @@
         </div>
 
         <div class="mt-2 small text-muted">
-            {% if casedetail.case.series.count == 0 %}
+            {% if casedetail.series_count|default:0 == 0 %}
                 <span class="text-warning">This case has no series / stacks attached</span>
             {% else %}
-                {{ casedetail.case.series.count }} series
+                {{ casedetail.series_count }} series
             {% endif %}
             {% if casedetail.question_schema %}
                 &nbsp;•&nbsp;<span class="text-success">Questions defined</span>

atlas/templates/atlas/partials/casedetails_management_links.html

@@ -1,14 +1,14 @@
-    <div class="btn-group btn-group-sm me-2" role="group" aria-label="management-actions">
-        <a class="btn btn-outline-secondary" href="{% url 'atlas:collection_case_displaysetup_legacy' casedetail.collection.pk casedetail.case.pk %}" title="Setup default display">
+<div class="btn-group btn-group-sm me-2" role="group" aria-label="management-actions">
+    <a class="btn btn-outline-secondary" href="{% url 'atlas:collection_case_displaysetup_legacy' collection.pk casedetail.case.pk %}" title="Setup default display">
         <i class="bi bi-display"></i>
     </a>
 
-        <a class="btn btn-outline-secondary" href="{% url 'atlas:collection_case_details_legacy' casedetail.collection.pk casedetail.case.pk %}" title="Case details">
+    <a class="btn btn-outline-secondary" href="{% url 'atlas:collection_case_details_legacy' collection.pk casedetail.case.pk %}" title="Case details">
         <i class="bi bi-info-square"></i>
     </a>
 
     {% if collection.collection_type == "QUE" %}
-            <a class="btn btn-outline-secondary" href='{% url "atlas:collection_case_questions_legacy" casedetail.collection.pk casedetail.case.pk %}' title="Manage questions">
+        <a class="btn btn-outline-secondary" href='{% url "atlas:collection_case_questions_legacy" collection.pk casedetail.case.pk %}' title="Manage questions">
             {% if casedetail.question_schema %}
                 <i class="bi bi-question-square text-success"></i>
             {% else %}
@@ -18,27 +18,27 @@
     {% endif %}
 
     {% if casedetail.case.previous_case %}
-            <a class="btn btn-outline-secondary" href='{% url "atlas:collection_case_priors_legacy" casedetail.collection.pk casedetail.case.pk %}' title="Manage priors">
+        <a class="btn btn-outline-secondary" href='{% url "atlas:collection_case_priors_legacy" collection.pk casedetail.case.pk %}' title="Manage priors">
             <i class="bi bi-link-45deg"></i>
         </a>
     {% endif %}
-    </div>
+</div>
 
 
 
-    <div class="btn-group btn-group-sm" role="group" aria-label="status-indicator">
+<div class="btn-group btn-group-sm" role="group" aria-label="status-indicator">
     {% if casedetail.default_viewerstate %}
         <button type="button" class="btn btn-sm btn-outline-success" aria-disabled="true" title="This case has a default viewerstate defined">
             <i class="bi bi-check"></i>
         </button>
     {% endif %}
-    </div>
+</div>
 
         {# Remove button (HTMX) - only shown when the surrounding template has `can_edit` true #}
-        {% if can_edit %}
-            <form class="d-inline ms-2 m-0" hx-post="{% url 'atlas:remove_case_from_collection' casedetail.case.pk casedetail.collection.pk %}" hx-target="closest li" hx-swap="outerHTML" hx-confirm="Remove this case from the collection?">
+{% if can_edit %}
+    <form class="d-inline ms-2 m-0" hx-post="{% url 'atlas:remove_case_from_collection' casedetail.case.pk collection.pk %}" hx-target="closest li" hx-swap="outerHTML" hx-confirm="Remove this case from the collection?">
         <button type="submit" class="btn btn-outline-danger btn-sm case-remove" title="Remove this case from the collection">
             <i class="bi bi-trash"></i>
         </button>
     </form>
-        {% endif %}
+{% endif %}

atlas/views.py

@@ -545,7 +545,12 @@ def case_displaysets_detail(request, pk):
 def case_displaysets_modal(request, pk):
     """Return HTML fragment for a CaseDisplaySet to be shown inside a modal."""
     displayset = get_object_or_404(CaseDisplaySet, pk=pk)
-    return render(request, 'atlas/case_displayset_modal.html', {'ds': displayset})
+    can_edit = False
+    try:
+        can_edit = displayset.case.check_user_can_edit(request.user)
+    except Exception:
+        can_edit = False
+    return render(request, 'atlas/case_displayset_modal.html', {'ds': displayset, 'can_edit': can_edit})
 
 def case_displaysets_delete(request, pk):
     try:
@@ -2735,7 +2740,7 @@ def case_order_dicom(request, pk):
         # TODO: don't try to order non stack series
         for series in case.series.all():
             try:
-                if request.user in series.get_author_objects():
+                if series.check_user_can_edit(request.user):
                     series.order_by_dicom()
                 else:
                     fail.append(f"{series.pk}: invalid permission")
@@ -3106,20 +3111,32 @@ def collection_viva(request, pk):
     #    )
     #)
 
+    # Prefetch and annotate aggressively to avoid N+1 queries in the viva view.
+    # - Prefetch `case__series` using the ordering from SeriesDetail
+    # - Prefetch only non-removed images for those series (ordered by position)
+    # - Prefetch case resources and display sets
+    from django.db.models import Prefetch as _Prefetch
+
+    series_images_qs = SeriesImage.objects.filter(removed=False).order_by("position")
+    series_qs = Series.objects.order_by("seriesdetail__sort_order").prefetch_related(
+        _Prefetch("images", queryset=series_images_qs)
+    )
+
     casedetails = (
         CaseDetail.objects
         .filter(collection=collection)
         .select_related("case")
         .order_by("sort_order")
         .prefetch_related(
-            # Prefetch series and their images directly on the case
-            "case__series",
-            "case__series__modality",
-            "case__series__examination",
-            "case__series__plane",
-            "case__series__contrast",
-            "case__series__images",
+            _Prefetch("case__series", queryset=series_qs),
+            _Prefetch("case__series__modality"),
+            _Prefetch("case__series__examination"),
+            _Prefetch("case__series__plane"),
+            _Prefetch("case__series__contrast"),
+            _Prefetch("case__caseresource_set"),
+            _Prefetch("case__display_sets"),
         )
+        .annotate(series_count=Count("case__seriesdetail"))
     )
 
 
@@ -4322,18 +4339,15 @@ def use_dates_as_descriptions(request, pk):
 
     return HttpResponse("Done")
 
-def collection_case_dicom_json_review(request, exam_id, case_id):
-    return collection_case_dicom_json(request, exam_id, case_id, review=True)
+def collection_case_dicom_json_review(request, exam_id, case_number):
+    return collection_case_dicom_json(request, exam_id, case_number, review=True)
 
 
-def collection_case_dicom_json(request, exam_id, case_id, review=False):
+def collection_case_dicom_json(request, exam_id, case_number, review=False):
     # Support either case_number (index) or case_id (case PK)
-    try:
-        casedetail = CaseDetail.objects.get(case=case_id, collection=exam_id)
-    except Exception:
     collection = get_object_or_404(CaseCollection, pk=exam_id)
     try:
-            case_obj = collection.get_case_by_index(int(case_id))
+        case_obj = collection.get_case_by_index(int(case_number))
         casedetail = CaseDetail.objects.get(case=case_obj, collection=collection)
     except Exception:
         raise Http404("Case not found in collection")

generic/mixins.py

@@ -70,6 +70,9 @@ class AuthorMixin():
 
         return self.author.filter(id=user.id).exists()
 
+    def get_author_display(self):
+        return ", ".join([i.username for i in self.get_author_objects()])
+
 
 class UserConfigurablePaginationMixin:
     default_per_page = 25

generic/models.py

@@ -387,7 +387,7 @@ class SeriesImageBase(models.Model):
         super().save(*args, **kwargs)  # Call the "real" save() method.
 
 
-class SeriesBase(models.Model):
+class SeriesBase(models.Model, AuthorMixin):
     info = models.TextField(
         blank=True,
         help_text="Description of stack, for admin organisation, will not be visible when taking",
@@ -444,16 +444,6 @@ class SeriesBase(models.Model):
 
         return False
 
-    def get_author_objects(self):
-        """Returns a list of authors"""
-        if self.author:
-            return self.author.all()
-        else:
-            return ["None"]
-
-    def get_author_display(self):
-        return ", ".join([i.username for i in self.get_author_objects()])
-
     def get_examination(self):
         """Returns a comma seperated text list of regions"""
         return str(self.examination)

sbas/templates/sbas/sbas_search.html

@@ -17,7 +17,7 @@
               <input class="form-control" id="sbas-question-search-input" name="q" type="search"
                      placeholder="Search questions by stem, answers, category or tags"
                      hx-get="{% url 'sbas:question_search_partial' %}"
-                     hx-trigger="input changed delay:400ms, keyup[key=='Enter']"
+                     hx-trigger="input delay:400ms, keyup[key=='Enter']"
                      hx-target="#sbas-question-search-results"
                      hx-indicator="#sbas-question-search-indicator" />
               <span class="input-group-text" id="sbas-question-search-indicator" aria-hidden="true">

sbas/views.py

@@ -244,7 +244,7 @@ def question_search_page(request):
     The actual results are returned by `question_search_partial` and swapped
     into the results container via HTMX.
     """
-    return render(request, "sbas/search.html", {})
+    return render(request, "sbas/sbas_search.html", {})
 
 
 @login_required

templates/404.html

@@ -3,6 +3,7 @@
 {% block content %}
     <div class="">
         <h2>404 error</h2>
+        {% if request.user.is_staff%}
         {% if reason %}
             {{ reason }}
         {% endif %}
@@ -10,5 +11,6 @@
         {% if resolved %}
             <h3>{{ resolved }}</h3>
         {% endif %}
+        {% endif %}
     </div>
 {% endblock %}