import json from django.contrib.contenttypes.fields import GenericRelation from django.db import models from django.utils import timezone from django.core.files.storage import FileSystemStorage from django.conf import settings from django.utils.html import format_html from django.urls import reverse from django.utils.translation import ugettext_lazy as _ from sortedm2m.fields import SortedManyToManyField import string from generic.models import CidUser, Examination, ExamBase, QuestionNote from collections import defaultdict from helpers.images import image_as_base64 import reversion image_storage = FileSystemStorage( # Physical file location ROOT location=u"{0}/".format(settings.MEDIA_ROOT), # Url for file base_url=u"{0}/".format(settings.MEDIA_URL), ) def image_directory_path(instance, filename): # file will be uploaded to MEDIA_ROOT/anatomy/picture/ return u"picture/anatomy/{0}".format(filename) class BodyPart(models.Model): bodypart = models.CharField(max_length=200) def __str__(self): return self.bodypart class Structure(models.Model): structure = models.CharField(max_length=200, unique=True) def __str__(self): return self.structure class Region(models.Model): region = models.CharField(max_length=200) def __str__(self): return self.region class Modality(models.Model): modality = models.CharField(max_length=200) def __str__(self): return self.modality class QuestionType(models.Model): text = models.CharField(max_length=400) def __str__(self): return self.text @reversion.register class AnatomyQuestion(models.Model): question_type = models.ForeignKey( QuestionType, on_delete=models.SET_NULL, null=True, default=1 ) image = models.ImageField( upload_to=image_directory_path, help_text="The image to use for the question. Ideally use use unmarked images and annotate (arrow) them on the test system. If you wish to reuse an image that is already uploaded 'clone' the question that contains it.As a preference", ) image_annotations = models.TextField( blank=True, help_text="Stores a JSON representation of annotations to be applied by cornerstonetools", ) description = models.CharField( max_length=400, help_text="Short description of the image e.g. 'Sagittal CT Chest, Abdomen & Pelvis', will be displayed as the title.", ) examination = models.ForeignKey( Examination, on_delete=models.SET_NULL, null=True, blank=True ) modality = models.ForeignKey( Modality, on_delete=models.SET_NULL, null=True, help_text="Modality of the image", ) region = models.ForeignKey( Region, on_delete=models.SET_NULL, null=True, blank=True, help_text="Region the image covers", ) body_part = models.ForeignKey( BodyPart, on_delete=models.SET_NULL, null=True, blank=True ) structure = models.ForeignKey( Structure, on_delete=models.SET_NULL, null=True, blank=True ) created_date = models.DateTimeField(default=timezone.now) open_access = models.BooleanField( help_text="If a question should be freely available to browse", default=True ) author = models.ManyToManyField( settings.AUTH_USER_MODEL, blank=True, help_text="Author(s) of question", related_name="anatomy_authored_questions", ) notes = GenericRelation(QuestionNote) class Meta: permissions = () def __str__(self): # Get first answer return "{}/{}: {} [{}, {}]".format( self.pk, self.question_type, self.get_primary_answer(), self.modality, self.structure, ) # Get associated exams e = self.exams.all().values_list("name", flat=True) exams = ", ".join(e) if a is None: return "({})".format(exams) else: return "{} ({}) [{}, {}]".format( a.answer, exams, self.modality, self.structure ) def get_absolute_url(self): return reverse("anatomy:question_detail", kwargs={"pk": self.pk}) def get_primary_answer(self): if hasattr(self, "prefetched_primary_answer") and self.prefetched_primary_answer: ans = self.prefetched_primary_answer[0] else: ans = self.answers.filter( proposed=False, status=Answer.MarkOptions.CORRECT ).first() # ans = self.answers.first() if ans is None: return "None yet..." else: return ans.answer if ( self.answers.filter( proposed=False, status=Answer.MarkOptions.CORRECT ).count() > 0 ): return ( self.answers.filter(proposed=False, status=Answer.MarkOptions.CORRECT) .first() .answer ) else: return "None yet..." def get_exams(self): e = self.exams.all().values_list("name", flat=True) exams = ", ".join(e) return exams def get_unmarked_user_answer_string(self, exam_pk=None): unmarked_answers = self.get_unmarked_user_answers(exam_pk) if not unmarked_answers: return "No answers to mark" return format_html( "{} answer unmarked: {}".format( len(unmarked_answers), ", ".join(unmarked_answers) ) ) def get_unmarked_user_answers(self, exam_pk=None): if exam_pk is None: user_answers = set([i.answer_compare for i in self.cid_user_answers.all()]) else: user_answers = set( [ i.answer_compare for i in self.cid_user_answers.filter(exam__id=exam_pk) ] ) user_answers.discard("") unmarked_answers = user_answers - self.get_marked_answers() return unmarked_answers def get_unmarked_user_answer_count(self, exam_pk=None): # if exam_pk is None: # return self.cid_user_answers.filter( # score=Answer.MarkOptions.UNMARKED # ).count() # else: # if hasattr(self, "prefetched_unmarked_cid_answers"): # return len(self.prefetched_unmarked_cid_answers) # # else: # return self.cid_user_answers.filter( # score=Answer.MarkOptions.UNMARKED, exam__id=exam_pk # ).count() return len(self.get_unmarked_user_answers(exam_pk)) def get_marked_answers(self): return set( [ i.answer_compare for i in self.answers.filter(proposed=False) # for i in self.answers.all() if i.status != i.MarkOptions.UNMARKED ] ) def get_annotations(self): return self.image_annotations def get_title(self): return "{}".format(self.description) def get_correct_unstripped_answers(self): return set( [ str(i) for i in self.answers.filter(proposed=False) # for i in self.answers.all() if i.status == i.MarkOptions.CORRECT ] ) def get_question_json(self, based=True, feedback=False): """Returns a json representation of the question""" # Loop through rapidimage associations images = [] annotations = [] feedback_images = [] if based: images.append(image_as_base64(self.image)) else: images.append("{}/{}".format(settings.REMOTE_URL, self.image.url)) if self.image_annotations: annotations.append(str(self.image_annotations)) json = { "images": images, # "feedback_image": [], "annotations": annotations, "type": "anatomy", "title": self.get_title(), "question": str(self.question_type), } json["answers"] = list(self.get_correct_unstripped_answers()) return json def get_image_url(self): return "https://www.penracourses.org.uk{}".format(self.image.url) def get_image_url_array(self): return json.dumps(["https://www.penracourses.org.uk{}".format(self.image.url)]) def get_image_annotations(self): return json.dumps([self.image_annotations]) @reversion.register class Answer(models.Model): question = models.ForeignKey( AnatomyQuestion, related_name="answers", on_delete=models.CASCADE ) answer = models.TextField(max_length=500) answer_compare = models.TextField(max_length=500) class MarkOptions(models.TextChoices): UNMARKED = "", _("Unmarked") INCORRECT = "0", _("Incorrect") HALF_MARK = "1", _("Half mark") CORRECT = "2", _("Correct") status = models.CharField( max_length=1, choices=MarkOptions.choices, default=MarkOptions.UNMARKED ) proposed = models.BooleanField(default=False) def __str__(self): return self.answer def save(self, *args, **kwargs): self.clean() return super(Answer, self).save(*args, **kwargs) def clean(self): if self.answer: self.answer = self.answer.strip() s = self.answer.lower() s = s.translate(str.maketrans("", "", string.punctuation)) self.answer_compare = s # def get_compare_string(self): # s = self.answer.lower().strip() # s = s.translate(str.maketrans('', '', string.punctuation)) # return s # class HalfMarkAnswers(models.Model): # question = models.ForeignKey(AnatomyQuestion, # related_name="half_mark_answers", # on_delete=models.CASCADE) # answer = models.CharField(max_length=500) # # def __str__(self): # return self.answer # # def clean(self): # if self.answer: # self.answer.strip() # # # class IncorrectAnswers(models.Model): # question = models.ForeignKey(AnatomyQuestion, # related_name="incorrect_answers", # on_delete=models.CASCADE) # answer = models.CharField(max_length=500) # # def __str__(self): # return self.answer # # def clean(self): # if self.answer: # self.answer.strip() @reversion.register class Exam(ExamBase): app_name = "anatomy" exam_questions = SortedManyToManyField( AnatomyQuestion, related_name="exams", blank="true" ) time_limit = models.IntegerField( help_text="Exam time limit (in seconds)", default=5400 ) author = models.ManyToManyField( settings.AUTH_USER_MODEL, blank=True, help_text="Author of exam", related_name="anatomy_exam_author", ) valid_cid_users = models.ManyToManyField( CidUser, blank=True, related_name="anatomy_exams" ) valid_user_users = models.ManyToManyField( settings.AUTH_USER_MODEL, blank=True, related_name="user_anatomy_exams" ) def get_exam_json(self, based=True): questions = self.exam_questions.all() exam_questions = defaultdict(dict) exam_order = [] for q in questions: exam_order.append(q.id) if based: image = image_as_base64(q.image) else: image = q.image.url exam_questions[q.id] = { "title": q.get_title(), "question": str(q.question_type), "images": [image], "annotations": [str(q.image_annotations)], "type": "anatomy", } if not self.exam_mode: exam_questions[q.id]["answers"] = list( q.get_correct_unstripped_answers() ) exam_json = { "eid": "anatomy/{}".format(self.id), "cached": False, "exam_type": "anatomy", "exam_name": self.name, "exam_mode": self.exam_mode, "exam_order": exam_order, "questions": exam_questions, } if self.time_limit: exam_json["exam_time"] = self.time_limit return exam_json @reversion.register class CidUserAnswer(models.Model): """User answers by candidate""" question = models.ForeignKey( AnatomyQuestion, related_name="cid_user_answers", on_delete=models.CASCADE ) answer = models.TextField(max_length=500, blank=True) answer_compare = models.TextField(max_length=500, blank=True) cid = models.BigIntegerField( blank=True, null=True, help_text="Candidate ID (limitied by BigIntegerField size)", ) #user = models.ForeignKey( # settings.AUTH_USER_MODEL, on_delete=models.CASCADE, blank=True, null=True#, related_name="user_anatomy_user_answers" #) # Each user answer is associated with a particular exam exam = models.ForeignKey( Exam, related_name="cid_user_answers", on_delete=models.CASCADE, null=True ) created = models.DateTimeField(auto_now_add=True) updated = models.DateTimeField(auto_now=True) score = models.CharField( max_length=1, choices=Answer.MarkOptions.choices, default=Answer.MarkOptions.UNMARKED, blank=True, ) def __str__(self): try: exam = self.exam except (Exam.DoesNotExist, KeyError) as e: exam = "None" return "{}/{}/{}: {}".format( exam, self.cid, self.question.get_primary_answer(), self.answer ) def save(self, *args, **kwargs): self.clean() return super(CidUserAnswer, self).save(*args, **kwargs) def clean(self): if self.answer: self.answer = self.answer.strip() s = self.answer.lower() s = s.translate(str.maketrans("", "", string.punctuation)).strip() self.answer_compare = s def get_absolute_url(self): return reverse("anatomy:user_answer_view", kwargs={"pk": self.pk}) # def get_compare_string(self): # # strip here should be unneccasry (providing clean is now working) # s = self.answer.lower().strip() # s = s.translate(str.maketrans('', '', string.punctuation)) # return s def get_answer_string(self): return self.answer def get_answer_score(self, cached=True): if cached and self.score: if self.score == Answer.MarkOptions.CORRECT: mark = 2 elif self.score == Answer.MarkOptions.HALF_MARK: mark = 1 elif self.score == Answer.MarkOptions.INCORRECT: mark = 0 return mark q = self.question ans = self.answer_compare if ans == "": self.score == Answer.MarkOptions.INCORRECT self.save() return 0 marked_ans = q.answers.filter(answer_compare__iexact=ans).first() mark = "unmarked" if marked_ans is not None: self.score = marked_ans.status self.save() if marked_ans.status == Answer.MarkOptions.CORRECT: mark = 2 elif marked_ans.status == Answer.MarkOptions.HALF_MARK: mark = 1 elif marked_ans.status == Answer.MarkOptions.INCORRECT: mark = 0 return mark if ( q.answers.filter( answer_compare__iexact=ans, status=Answer.MarkOptions.CORRECT ).first() is not None ): mark = 2 elif ( q.answers.filter( answer_compare__iexact=ans, status=Answer.MarkOptions.HALF_MARK ).first() is not None ): mark = 1 elif q.answers.filter( answer_compare__iexact=ans, status=Answer.MarkOptions.INCORRECT ).first(): mark = 0 else: mark = "unmarked" return mark