Ross
625 lines
20 KiB
Python
Executable File
625 lines
20 KiB
Python
Executable File
from django import forms
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from django.contrib.admin import widgets
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from django.forms import (
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BaseInlineFormSet,
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Form,
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HiddenInput,
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ModelForm,
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ModelMultipleChoiceField,
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ModelChoiceField,
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ChoiceField,
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CharField,
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ValidationError,
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modelformset_factory,
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CheckboxSelectMultiple
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)
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from django.forms import inlineformset_factory
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from django.shortcuts import get_object_or_404
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from atlas.models import (
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Case,
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CaseCollection,
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CaseDetail,
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CidReportAnswer,
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Differential,
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Finding,
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SelfReview,
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Series,
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SeriesImage,
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SeriesFinding,
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Condition,
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Structure,
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Subspecialty,
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UncategorisedDicom,
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UserReportAnswer,
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)
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from anatomy.models import Modality
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from generic.models import Examination#, Sign
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# from generic.models import Examination, Site, Condition, Sign
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from django.contrib.admin.widgets import FilteredSelectMultiple
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from django.forms.widgets import RadioSelect, TextInput, Textarea
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from tinymce.widgets import TinyMCE
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from dal import autocomplete
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from autocomplete import widgets as htmx_widgets
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import logging
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class ConditionForm(ModelForm):
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class Meta:
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model = Condition
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exclude = ["rcr_curriculum"]
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widgets = {
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"synonym": autocomplete.ModelSelect2Multiple(
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url="atlas:condition-autocomplete"
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),
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"parent": autocomplete.ModelSelect2Multiple(
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url="atlas:condition-autocomplete"
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),
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"rcr_curriculum_map": autocomplete.ModelSelect2Multiple(
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url="atlas:condition-autocomplete-rcr-curriculum"
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),
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}
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class CaseCollectionForm(ModelForm):
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class Meta:
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model = CaseCollection
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exclude = ["cases", "valid_cid_users"]
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def __init__(self, *args, **kwargs):
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self.user = kwargs.pop(
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"user"
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) # To get request.user. Do not use kwargs.pop('user', None) due to potential security hole
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if kwargs.get("instance"):
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# We get the 'initial' keyword argument or initialize it
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# as a dict if it didn't exist.
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initial = kwargs.setdefault("initial", {})
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# The widget for a ModelMultipleChoiceField expects
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# a list of primary key for the selected data.
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# initial["exams"] = [t.pk for t in kwargs["instance"].exams.all()]
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ModelForm.__init__(self, *args, **kwargs)
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super(CaseCollectionForm, self).__init__(*args, **kwargs)
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class FindingForm(ModelForm):
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class Meta:
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model = Finding
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exclude = []
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widgets = {
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"synonym": autocomplete.ModelSelect2Multiple(
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url="atlas:finding-autocomplete"
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),
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}
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class StructureForm(ModelForm):
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class Meta:
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model = Structure
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exclude = []
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widgets = {
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"synonym": autocomplete.ModelSelect2Multiple(
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url="atlas:structure-autocomplete"
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),
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}
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class SeriesFindingForm(ModelForm):
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class Meta:
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model = SeriesFinding
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exclude = ["series", "annotation_json", "viewport_json"]
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widgets = {
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"findings": autocomplete.ModelSelect2Multiple(
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url="atlas:finding-autocomplete"
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),
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"structures": autocomplete.ModelSelect2Multiple(
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url="atlas:structure-autocomplete"
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),
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}
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def __init__(self, *args, **kwargs):
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if kwargs.get("series_id"):
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# We get the 'initial' keyword argument or initialize it
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# as a dict if it didn't exist.
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initial = kwargs.setdefault("initial", {})
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# The widget for a ModelMultipleChoiceField expects
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# a list of primary key for the selected data.
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initial["series"] = kwargs.pop("series_id")
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# elif kwargs.get("instance"):
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# # We get the 'initial' keyword argument or initialize it
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# # as a dict if it didn't exist.
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# initial = kwargs.setdefault("initial", {})
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# # The widget for a ModelMultipleChoiceField expects
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# # a list of primary key for the selected data.
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# #initial["structures"] = [t.pk for t in kwargs["structures"].case.all()]
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# #initial["structures"] = [t.pk for t in kwargs["structures"].case.all()]
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super(SeriesFindingForm, self).__init__(*args, **kwargs)
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ModelForm.__init__(self, *args, **kwargs)
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class SeriesForm(ModelForm):
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class Media:
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# Django also includes a few javascript files necessary
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# for the operation of this form element. You need to
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# include <script src="/admin/jsi18n"></script>
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# in the template.
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css = {
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"all": ["css/widgets.css"],
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}
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# Adding this javascript is crucial
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js = ["jsi18n.js", "tesseract.min.js", "js/upload_form_helpers.js"]
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def __init__(self, *args, **kwargs):
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self.user = kwargs.pop(
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"user"
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) # To get request.user. Do not use kwargs.pop('user', None) due to potential security hole
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if kwargs.get("instance"):
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# We get the 'initial' keyword argument or initialize it
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# as a dict if it didn't exist.
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initial = kwargs.setdefault("initial", {})
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# The widget for a ModelMultipleChoiceField expects
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# a list of primary key for the selected data.
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initial["case"] = [t.pk for t in kwargs["instance"].case.all()]
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super(SeriesForm, self).__init__(*args, **kwargs)
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# self.fields["examination"] = ModelChoiceField(
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# queryset=Examination.objects.all(),
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# widget=FilteredSelectMultiple(verbose_name="Examination", is_stacked=False),
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# )
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self.fields["modality"] = ModelChoiceField(
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required=True,
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queryset=Modality.objects.all(),
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)
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ModelForm.__init__(self, *args, **kwargs)
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if self.user.groups.filter(name="atlas_editor").exists():
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case_queryset = Case.objects.all()
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else:
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case_queryset = Case.objects.filter(
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author__id=self.user.id
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) # | Case.objects.filter(open_access=True)
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self.fields["case"] = ModelMultipleChoiceField(
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required=False,
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queryset=case_queryset,
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widget=FilteredSelectMultiple(verbose_name="Case", is_stacked=False),
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)
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def save(self, commit=True):
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# Get the unsaved Long instance
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instance = ModelForm.save(self, False)
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# Prepare a 'save_m2m' method for the form,
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old_save_m2m = self.save_m2m
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def save_m2m():
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old_save_m2m()
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instance.case.clear()
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for case in self.cleaned_data["case"]:
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# We need the id here
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instance.case.add(case.pk)
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self.save_m2m = save_m2m
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# Do we need to save all changes now?
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# if commit:
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instance.save()
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self.save_m2m()
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# instance.anonymise_images()
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return instance
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class Meta:
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model = Series
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exclude = ["author", "series_instance_uid"]
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widgets = {
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"examination": autocomplete.ModelSelect2(
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url="generic:examination-autocomplete"
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),
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"description": Textarea(attrs={"maxlength": 1000, "rows": 5, "cols": 80}),
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}
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class CaseForm(ModelForm):
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# exams = ModelMultipleChoiceField(required=False, queryset=Exam.objects.all(),widget=FilteredSelectMultiple(verbose_name="Exams", is_stacked=False))
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class Media:
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# Django also includes a few javascript files necessary
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# for the operation of this form element. You need to
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# include <script src="/admin/jsi18n"></script>
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# in the template.
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css = {
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"all": ["css/widgets.css"],
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}
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# Adding this javascript is crucial
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js = ["jsi18n.js", "tesseract.min.js", "js/upload_form_helpers.js"]
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def __init__(self, *args, **kwargs):
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logging.info("LOG")
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logging.debug(kwargs)
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self.user = kwargs.pop(
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"user"
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) # To get request.user. Do not use kwargs.pop('user', None) due to potential security hole
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# This is populated if we create the case from an exam/collection
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self.collection = None
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if kwargs["initial"] is not None and "exams" in kwargs["initial"]:
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collections = kwargs["initial"].pop("exams")
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logging.debug(collections)
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self.collection = get_object_or_404(CaseCollection, pk=collections[0])
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if kwargs.get("instance"):
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# We get the 'initial' keyword argument or initialize it
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# as a dict if it didn't exist.
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initial = kwargs.setdefault("initial", {})
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# The widget for a ModelMultipleChoiceField expects
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# a list of primary key for the selected data.
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# initial["exams"] = [t.pk for t in kwargs["instance"].exams.all()]
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ModelForm.__init__(self, *args, **kwargs)
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super(CaseForm, self).__init__(*args, **kwargs)
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# self.fields["series"].queryset =
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def get_queryset(self, request):
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return (
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super()
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.get_queryset(request)
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.prefetch_related(
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"condition", "subspecialty", "pathological_process", "series"
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)
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)
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class Meta:
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model = Case
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# fields = ['due_back']
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# fields = '__all__'
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fields = [
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# "examination",
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# "site",
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"title",
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"subspecialty",
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"description",
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"history",
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"presentation",
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"discussion",
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"condition",
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"pathological_process",
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"report",
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"open_access",
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"previous_case",
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"diagnostic_certainty",
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]
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# fields = ['question', 'findings', 'subspecialty', 'references']
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widgets = {
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# "normal": RadioSelect(
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# choices=[(True, 'Yes'),
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# (False, 'No')])
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# "findings": TinyMCE(attrs={"cols": 80, "rows": 20}),
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# "mark_scheme": TinyMCE(attrs={"cols": 80, "rows": 30}),
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"description": Textarea(attrs={"cols": 80, "rows": 5}),
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"history": Textarea(attrs={"cols": 80, "rows": 5}),
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"discussion": Textarea(attrs={"cols": 80, "rows": 5}),
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"condition": autocomplete.ModelSelect2Multiple(
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url="atlas:condition-autocomplete"
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),
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"presentation": autocomplete.ModelSelect2Multiple(
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url="atlas:presentation-autocomplete"
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),
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"subspecialty": CheckboxSelectMultiple(),
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"pathological_process": CheckboxSelectMultiple()
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}
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def save(self, commit=True):
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# Get the unsaved Case instance
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instance = ModelForm.save(self, False)
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# Prepare a 'save_m2m' method for the form,
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old_save_m2m = self.save_m2m
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def save_m2m():
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old_save_m2m()
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# instance.exams.clear()
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# for exam in self.cleaned_data["exams"]:
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# # We need the id here
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# instance.exams.add(exam.pk)
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self.save_m2m = save_m2m
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# Do we need to save all changes now?
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# if commit:
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instance.save()
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self.save_m2m()
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logging.debug(f"{self.collection=}")
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if self.collection is not None:
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logging.debug(f"{self.collection=}")
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case_no = self.collection.cases.count() + 1
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logging.debug(f"{case_no=}")
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logging.debug(f"{instance=}")
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# Create through model
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#cd = CaseDetail(case=instance, collection=exam, sort_order=case_no)
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self.collection.cases.add(instance, through_defaults={"sort_order": case_no})
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return instance
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CaseDifferentialFormSet = inlineformset_factory(
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Case,
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Differential,
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exclude=[],
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can_delete=True,
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extra=1,
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max_num=10,
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widgets={
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"condition": autocomplete.ModelSelect2(url="atlas:condition-autocomplete"),
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"text": Textarea(attrs={"maxlength": 1000, "rows": 3, "cols": 80}),
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},
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)
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class CaseSeriesForm(ModelForm):
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def __init__(self, *args, user, **kwargs):
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super(CaseSeriesForm, self).__init__(*args, **kwargs)
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if not user.groups.filter(name="atlas_editor").exists():
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queryset = Series.objects.filter(author__id=user.id)
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else:
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queryset = Series.objects.all()
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self.fields["series"] = ModelChoiceField(
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required=False,
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queryset=queryset,
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# widget=Select(verbose_name="Series", is_stacked=False),
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)
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class CaseCollectionCaseForm(ModelForm):
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def __init__(self, *args, user, **kwargs):
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super(CaseCollectionCaseForm, self).__init__(*args, **kwargs)
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if not user.groups.filter(name="atlas_editor").exists():
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queryset = Case.objects.filter(author__id=user.id)
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else:
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queryset = Case.objects.all()
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self.fields["case"] = ModelChoiceField(
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required=False,
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queryset=queryset,
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# widget=Select(verbose_name="Series", is_stacked=False),
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)
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SeriesFormSet = inlineformset_factory(
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Case,
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Series.case.through,
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form=CaseSeriesForm,
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exclude=[],
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can_delete=True,
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extra=0,
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max_num=10,
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)
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CaseCollectionCaseFormSet = inlineformset_factory(
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CaseCollection,
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Case.casecollection_set.through,
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form=CaseCollectionCaseForm,
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exclude=[],
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can_delete=True,
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extra=0,
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max_num=50,
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)
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SeriesImageFormSet = inlineformset_factory(
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Series,
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SeriesImage,
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exclude=[],
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can_delete=True,
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extra=0,
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max_num=2000,
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)
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class BaseReportAnswerForm(ModelForm):
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class Meta:
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fields = ["answer"]
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widgets = {
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# "normal": RadioSelect(
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# choices=[(True, 'Yes'),
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# (False, 'No')])
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# "findings": TinyMCE(attrs={"cols": 80, "rows": 20}),
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# "mark_scheme": TinyMCE(attrs={"cols": 80, "rows": 30}),
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"answer": Textarea(attrs={"cols": 100, "rows": 5}),
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}
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# help_texts = {
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# "answer": "Write your answer in here."
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# }
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def __init__(self, *args, **kwargs):
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super(BaseReportAnswerForm, self).__init__(*args, **kwargs)
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self.fields["answer"].required = False
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class CidReportAnswerForm(BaseReportAnswerForm):
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class Meta(BaseReportAnswerForm.Meta):
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model = CidReportAnswer
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class UserReportAnswerForm(BaseReportAnswerForm):
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class Meta(BaseReportAnswerForm.Meta):
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model = UserReportAnswer
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class CidReportAnswerMarkForm(ModelForm):
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class Meta:
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model = CidReportAnswer
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fields = ["score", "feedback"]
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widgets = {
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# "normal": RadioSelect(
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# choices=[(True, 'Yes'),
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# (False, 'No')])
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# "findings": TinyMCE(attrs={"cols": 80, "rows": 20}),
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# "mark_scheme": TinyMCE(attrs={"cols": 80, "rows": 30}),
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"feedback": Textarea(attrs={"cols": 80, "rows": 4}),
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}
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def __init__(self, *args, **kwargs):
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super(CidReportAnswerMarkForm, self).__init__(*args, **kwargs)
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self.fields["score"].required = False
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#class AddCollectionToCaseForm(Form):
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#
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# def __init__(self, *args, user, **kwargs):
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# super(AddCollectionToCaseForm, self).__init__(*args, **kwargs)
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# print("INIT", args, kwargs)
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#
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# if not user.groups.filter(name="atlas_editor").exists():
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# queryset = CaseCollection.objects.filter(author__id=user.id)
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# else:
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# queryset = CaseCollection.objects.all()
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#
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# self.valid_collections = queryset
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# self.case = get_object_or_404(Case, pk=pk)
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#
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# self.fields["casecollection"] = ModelMultipleChoiceField(
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# required=False,
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# queryset=queryset,
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# # widget=Select(verbose_name="Series", is_stacked=False),
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# )
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#
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# def save(self, *args, **kwargs):
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# print("SAVE", args, kwargs)
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# instance = super(AddCollectionToCaseForm, self).save(*args, **kwargs)
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#
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# # Here we save the modified project selection back into the database
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# instance.casecollection_set.set(self.cleaned_data['casecollection'])
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#
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# print(f"{instance=}")
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#
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# return instance
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#
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# def clean_casecollection(self):
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# collection_set = self.cleaned_data["casecollection"]
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#
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# print(f"{collection_set=}")
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#
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# for col in collection_set:
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# if col not in self.valid_collections:
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# raise ValidationError("Invalid collection")
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#
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# return collection_set
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class AddCollectionToCaseForm(Form):
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def __init__(self, *args, user, **kwargs):
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super(AddCollectionToCaseForm, self).__init__(*args, **kwargs)
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print("INIT", args, kwargs)
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if not user.groups.filter(name="atlas_editor").exists():
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queryset = CaseCollection.objects.filter(author__id=user.id)
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else:
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queryset = CaseCollection.objects.all()
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|
|
self.valid_collections = queryset
|
|
|
|
self.fields["casecollection"] = ModelMultipleChoiceField(
|
|
required=False,
|
|
queryset=queryset,
|
|
# widget=Select(verbose_name="Series", is_stacked=False),
|
|
)
|
|
|
|
def save(self, *args, **kwargs):
|
|
print("SAVE", args, kwargs)
|
|
instance = super(AddCollectionToCaseForm, self).save(*args, **kwargs)
|
|
|
|
# Here we save the modified project selection back into the database
|
|
instance.casecollection_set.set(self.cleaned_data['casecollection'])
|
|
|
|
print(f"{instance=}")
|
|
|
|
return instance
|
|
|
|
def clean_casecollection(self):
|
|
collection_set = self.cleaned_data["casecollection"]
|
|
|
|
print(f"{collection_set=}")
|
|
|
|
for col in collection_set:
|
|
if col not in self.valid_collections:
|
|
raise ValidationError("Invalid collection")
|
|
|
|
return collection_set
|
|
|
|
|
|
class SelfReviewForm(ModelForm):
|
|
|
|
class Meta:
|
|
model = SelfReview
|
|
fields = ["user_exam", "case", "comments", "findings", "interpretation"]
|
|
widgets = {"user_exam": HiddenInput(), "case": HiddenInput()}
|
|
|
|
def __init__(self, *args, **kwargs):
|
|
if "user_exam_id" in kwargs:
|
|
user_exam_id = kwargs.pop("user_exam_id")
|
|
if "case_id" in kwargs:
|
|
case_id = kwargs.pop("case_id")
|
|
|
|
ModelForm.__init__(self, *args, **kwargs)
|
|
super(SelfReviewForm, self).__init__(*args, **kwargs)
|
|
|
|
|
|
class UncategorisedDicomForm(ModelForm):
|
|
class Meta:
|
|
model = UncategorisedDicom
|
|
fields = ["image"]#, "user"]
|
|
|
|
|
|
#UncategorisedDicomFormset = formset_factory(UncategorisedDicomForm)
|
|
|
|
#class ConditionAutocompleteFormModel(forms.ModelForm):
|
|
# class Meta:
|
|
# model = Condition
|
|
# fields = ["name"]
|
|
# widgets = {
|
|
# 'members': widgets.Autocomplete(
|
|
# name='members',
|
|
# options=dict(multiselect=True, model=Condition)
|
|
# )
|
|
# }
|
|
|
|
class ConditionAutocompleteForm(Form):
|
|
condition = ModelChoiceField(queryset=Condition.objects.all(), widget=htmx_widgets.Autocomplete(
|
|
name="conditions", options=dict(model=Condition)
|
|
))
|