update search

results.json

@@ -24,10 +24,11 @@
     "pageKeywords": "Brain, Diagnosis, Pathology-Based Diagnoses, Stroke, Cerebral Ischemia and Infarction, Hypotensive Cerebral Infarction",
     "reasons": [
       "Breadcrumbs",
+      "Content",
       "Keywords",
       "Title"
     ],
-    "snippet": "",
+    "snippet": "## KEY FACTS - ### Terminology - Hypotensive cerebral infarction (HCI) - Insufficient cerebral blood flow to meet...",
     "linked_info": {
       "anatomy": {
         "exists": true,
@@ -66,7 +67,7 @@
         "exists": true,
         "links": [
           {
-            "title": "Cerebral Infarction (Acute, Multiple Embolic)",
+            "title": "Multiple Embolic Cerebral Infarctions",
             "docid": "6dfc36d2-a561-49d5-a391-e740ba94e5d7"
           },
           {
@@ -84,5 +85,130 @@
         ]
       }
     }
+  },
+  {
+    "path": "docs_md/articles/multiple-embolic-cerebral-infarctions_6dfc36d2-a561-49d5-a391-e740ba94e5d7.md",
+    "title": "Multiple Embolic Cerebral Infarctions",
+    "docid": "6dfc36d2-a561-49d5-a391-e740ba94e5d7",
+    "breadcrumbs": [
+      "Brain",
+      "Diagnosis",
+      "Pathology-Based Diagnoses",
+      "Stroke",
+      "Cerebral Ischemia and Infarction",
+      "Multiple Embolic Cerebral Infarctions"
+    ],
+    "authors": [
+      {
+        "key": "cdbaaa96-a7b4-4498-a355-a2823a7d9e26",
+        "value": "Kelly A. Dahlstrom, DO"
+      },
+      {
+        "key": "8d5254e9-8dda-478b-8f08-bdee97a32c79",
+        "value": "Karen L. Salzman, MD, FACR"
+      }
+    ],
+    "pageKeywords": "Brain, Diagnosis, Pathology-Based Diagnoses, Stroke, Cerebral Ischemia and Infarction, Multiple Embolic Cerebral Infarctions",
+    "reasons": [
+      "Content"
+    ],
+    "snippet": "...laque features - ### Top Differential Diagnoses - Hypotensive cerebral infarction - Vasculitis - Multiple sclerosis - Parenchyma...",
+    "linked_info": {
+      "anatomy": {
+        "exists": false,
+        "links": []
+      },
+      "differential": {
+        "exists": true,
+        "links": [
+          {
+            "title": "Hypotensive Cerebral Infarction",
+            "docid": "a3d3dd38-629e-42fc-9d0d-9a03a39781eb"
+          },
+          {
+            "title": "Vasculitis",
+            "docid": "490b3aed-37e2-4ec6-95dd-76efc734490f"
+          },
+          {
+            "title": "Multiple Sclerosis",
+            "docid": "abe95a5e-394f-411b-aca6-72ab160a1d0d"
+          },
+          {
+            "title": "Parenchymal Metastases",
+            "docid": "2cf0bd40-4597-4c0b-83e4-74340304b98f"
+          }
+        ]
+      }
+    }
+  },
+  {
+    "path": "docs_md/articles/confluent-white-matter-lesions_33041afc-b606-4d06-8fb6-495849d9659a.md",
+    "title": "Confluent White Matter Lesions",
+    "docid": "33041afc-b606-4d06-8fb6-495849d9659a",
+    "breadcrumbs": [
+      "Brain",
+      "Differential Diagnosis",
+      "Supratentorial Brain Parenchyma",
+      "Anatomically Based Differentials",
+      "Confluent White Matter Lesions"
+    ],
+    "authors": [
+      {
+        "key": "8d5254e9-8dda-478b-8f08-bdee97a32c79",
+        "value": "Karen L. Salzman, MD, FACR"
+      }
+    ],
+    "pageKeywords": "Brain, Differential Diagnosis, Supratentorial Brain Parenchyma, Anatomically Based Differentials, Confluent White Matter Lesions",
+    "reasons": [
+      "Content"
+    ],
+    "snippet": "...ccur alone or in association with Alzheimer disease - **Hypotensive Cerebral Infarction** - Infarct resulting from insufficient cerebral...",
+    "linked_info": {
+      "anatomy": {
+        "exists": false,
+        "links": []
+      },
+      "differential": {
+        "exists": false,
+        "links": []
+      }
+    }
+  },
+  {
+    "path": "docs_md/articles/multiple-brain-hyperintensities-t2-flair-common_c4edb275-a180-4910-9cad-da08c1138784.md",
+    "title": "Multiple Brain Hyperintensities (T2/FLAIR), Common",
+    "docid": "c4edb275-a180-4910-9cad-da08c1138784",
+    "breadcrumbs": [
+      "Brain",
+      "Differential Diagnosis",
+      "Brain Parenchyma, General",
+      "Modality-Specific Imaging Findings",
+      "Multiple Brain Hyperintensities (T2/FLAIR), Common"
+    ],
+    "authors": [
+      {
+        "key": "1fa14dfd-71ea-4960-908e-e720313bc63a",
+        "value": "Santhosh Gaddikeri, MD"
+      },
+      {
+        "key": "30ce27b2-237f-4aff-a88f-65ead356335b",
+        "value": "Marinos Kontzialis, MD"
+      }
+    ],
+    "pageKeywords": "Brain, Differential Diagnosis, Brain Parenchyma, General, Modality-Specific Imaging Findings, Multiple Brain Hyperintensities (T2/FLAIR), Common",
+    "reasons": [
+      "Content"
+    ],
+    "snippet": "...ges (on GRE/SWI) - BG/thalami, brainstem, cerebellum - Confluent WM disease (centrum semiovale, corona radiata) - **Ac...",
+    "linked_info": {
+      "anatomy": {
+        "exists": false,
+        "links": []
+      },
+      "differential": {
+        "exists": false,
+        "links": []
+      }
+    }
   }
 ]

tools/search_md_gui.py

@@ -21,8 +21,15 @@ import asyncio
 from nicegui import ui, app
 import re
 
-app.add_static_files('/images', 'docs_md/articles/images')
+_current_dir = os.path.dirname(os.path.abspath(__file__))
-app.add_static_files('/document/images', 'docs_md/articles/images')
+_articles_dir = os.path.abspath(os.path.join(_current_dir, '..', 'docs_md', 'articles'))
+_images_dir = os.path.join(_articles_dir, 'images')
+_img_dir = os.path.join(_articles_dir, 'img')
+
+app.add_static_files('/images', _images_dir)
+app.add_static_files('/document/images', _images_dir)
+app.add_static_files('/img', _img_dir)
+app.add_static_files('/document/img', _img_dir)
 import shutil
 import subprocess
 
@@ -821,6 +828,45 @@ def search_page() -> None:  # build UI
     run_conv_button = ui.button('Run conversion', on_click=lambda: asyncio.create_task(run_dtm_handler()), color='primary')
 
 
+def linkify_references(content: str, root: str = 'docs_md/articles') -> str:
+    def replace_anatomy(match):
+        raw_text = match.group(0)
+        uuid = match.group(1)
+        fm, _, _ = search_md.get_doc_by_id(root, uuid)
+        if fm:
+            title = fm.get('title') or fm.get('pageTitle') or uuid
+            return f'[{title}](/document/{uuid})'
+        return raw_text
+        
+    anatomy_pattern = re.compile(r'(?:[a-zA-Z0-9\-]+/)?ANATOMY:([a-f0-9\-]{36})', re.IGNORECASE)
+    content = anatomy_pattern.sub(replace_anatomy, content)
+    
+    def replace_ddx(match):
+        raw_text = match.group(0)
+        uuid = match.group(1)
+        fm, _, _ = search_md.get_doc_by_id(root, uuid)
+        if fm:
+            title = fm.get('title') or fm.get('pageTitle') or uuid
+            return f'[{title}](/document/{uuid})'
+        return raw_text
+        
+    ddx_pattern = re.compile(r'DDX:([a-f0-9\-]{36})', re.IGNORECASE)
+    content = ddx_pattern.sub(replace_ddx, content)
+    
+    def replace_standard_links(match):
+        label = match.group(1)
+        uuid = match.group(3)
+        fm, _, _ = search_md.get_doc_by_id(root, uuid)
+        if fm:
+            return f'[{label}](/document/{uuid})'
+        return match.group(0)
+        
+    markdown_link_pattern = re.compile(r'\[([^\]]+)\]\(((?:https?://app\.statdx\.com)?/document/[^/]+/([a-f0-9\-]{36}))\)')
+    content = markdown_link_pattern.sub(replace_standard_links, content)
+    
+    return content
+
+
 @ui.page('/document/{identifier}')
 def render_doc_page(identifier: str):
     ui.add_head_html('''
@@ -899,6 +945,8 @@ def render_doc_page(identifier: str):
     ''')
     
     fm, content, path = search_md.get_doc_by_id('docs_md/articles', identifier)
+    if fm and content:
+        content = linkify_references(content, 'docs_md/articles')
     if not fm:
         with ui.column().classes('w-full items-center justify-center p-12 gap-4'):
             ui.icon('warning', size='4rem', color='negative')