Add proxy support for SSL certificate fetching in ssl_check utility

.gitignore

@@ -9,4 +9,10 @@ __pycache__/*
 build
 dist
 
-*.build
+test/*
+
+*.build
+
+C:/* # Windows paths on linux
+
+uploader.log

anon2/anon_gui.spec

@@ -1,44 +0,0 @@
-# -*- mode: python ; coding: utf-8 -*-
-
-
-block_cipher = None
-
-
-a = Analysis(
-    ['anon_gui.py'],
-    pathex=[],
-    binaries=[],
-    datas=[],
-    hiddenimports=[],
-    hookspath=[],
-    hooksconfig={},
-    runtime_hooks=[],
-    excludes=[],
-    win_no_prefer_redirects=False,
-    win_private_assemblies=False,
-    cipher=block_cipher,
-    noarchive=False,
-)
-pyz = PYZ(a.pure, a.zipped_data, cipher=block_cipher)
-
-exe = EXE(
-    pyz,
-    a.scripts,
-    a.binaries,
-    a.zipfiles,
-    a.datas,
-    [],
-    name='anon_gui',
-    debug=False,
-    bootloader_ignore_signals=False,
-    strip=False,
-    upx=True,
-    upx_exclude=[],
-    runtime_tmpdir=None,
-    console=False,
-    disable_windowed_traceback=False,
-    argv_emulation=False,
-    target_arch=None,
-    codesign_identity=None,
-    entitlements_file=None,
-)

anon_gui.cmd

@@ -1,6 +0,0 @@
-
-@echo off
-rem This script was created by Nuitka to execute 'anon_gui.exe' with Python DLL being found.
-set PATH=C:\PROGRA~1\PYTHON~1;%PATH%
-set PYTHONHOME=C:\Program Files\Python311
-"%~dp0anon_gui.exe" %*

anonymiser.py

@@ -0,0 +1,41 @@
+import dicognito.anonymizer
+import pydicom
+from pathlib import Path
+import os
+
+class Anonymizer:
+
+    def __init__(self, output_dir):
+        self.output_dir = output_dir
+        self.anonymizer = dicognito.anonymizer.Anonymizer()
+
+        self.i: int = 0
+
+    def reset(self):
+        self.i = 0
+        self.anonymizer = dicognito.anonymizer.Anonymizer()
+
+
+    def anonymize_file(self, input_file: Path, output_file: Path | None = None, remove_original=True):
+        with pydicom.dcmread(input_file) as dataset:
+
+            if output_file is None:
+                new_filepath: Path
+                # Get next available filename
+                while os.path.exists(
+                    output_file := self.output_dir.joinpath(f"IMG_{self.i:03}.dcm")
+                ):
+                    self.i += 1
+
+            self.anonymizer.anonymize(dataset)
+            dataset.save_as(output_file)
+
+            if remove_original:
+                os.remove(input_file)
+            return dataset, output_file
+
+
+    
+
+
+

build.py

@@ -1,46 +1,204 @@
 import shutil
+import importlib.util
 from pathlib import Path
 import PyInstaller.__main__
 import typer
 from rich import print
-from rich.progress import Progress
+import time
+from datetime import datetime
 
 
 app = typer.Typer()
 
+
 @app.command()
-def build(build: bool = True, copy: bool = True, test: bool = False):
+def build(build: bool = True, copy: bool = True, test: bool = False, dest: str | None = None):
+    """Windows-focused build script.
+
+    - `--test` creates a one-file test binary in `dist\test`.
+    - `--copy` (default) copies the artifact to the shared network path used previously.
+    """
+
+    project_root = Path(__file__).resolve().parent
 
     if build:
+        if test:
+            print("Building Windows test one-file bundle with PyInstaller")
+            # On Windows use ';' as add-data separator (src;dest)
+            # Use absolute path for the icon folder so PyInstaller can find it
+            icon_src = str(project_root / "icon")
+            add_data_args = ["--add-data", f"{icon_src};icon"]
 
-        print("Building with PyInstaller")
+            # Try to include dicognito package data (release_notes.md) which
-        PyInstaller.__main__.run([
+            # PyInstaller may miss. This prevents runtime FileNotFoundError for
-            "anon_gui.spec"
+            # dicognito/release_notes.md when the package expects the file at runtime.
-        ])
+            try:
+                spec = importlib.util.find_spec("dicognito")
+                if spec and spec.submodule_search_locations:
+                    dicognito_path = Path(spec.submodule_search_locations[0])
+                    release_notes = dicognito_path / "release_notes.md"
+                    if release_notes.exists():
+                        # PyInstaller on Windows expects 'src;dest'
+                        add_data_args += ["--add-data", f"{str(release_notes)};dicognito"]
+                    else:
+                        # include whole package folder if the single file wasn't found
+                        add_data_args += ["--add-data", f"{str(dicognito_path)};dicognito"]
+            except Exception as e:
+                print(f"Warning: couldn't locate dicognito package: {e}")
 
+            # Try to include pythonnet runtime DLLs to avoid missing
+            # Python.Runtime.dll at runtime (used by pythonnet / webview).
+            add_binary_args = []
+            try:
+                spec_py = importlib.util.find_spec("pythonnet")
+                if spec_py and spec_py.submodule_search_locations:
+                    pn_path = Path(spec_py.submodule_search_locations[0])
+                    runtime_dir = pn_path / "runtime"
+                    if runtime_dir.exists():
+                        for f in runtime_dir.rglob("*.dll"):
+                            # PyInstaller on Windows expects 'src;dest'
+                            add_binary_args += ["--add-binary", f"{str(f)};pythonnet\\runtime"]
+                    # also include the full pythonnet package folder as data so
+                    # package-relative lookups succeed at runtime
+                    add_data_args += ["--add-data", f"{str(pn_path)};pythonnet"]
+                    # try to include clr_loader package as well
+                    try:
+                        spec_clr = importlib.util.find_spec("clr_loader")
+                        if spec_clr and spec_clr.submodule_search_locations:
+                            clr_path = Path(spec_clr.submodule_search_locations[0])
+                            add_data_args += ["--add-data", f"{str(clr_path)};clr_loader"]
+                    except Exception:
+                        pass
+            except Exception as e:
+                print(f"Warning: couldn't locate pythonnet runtime: {e}")
+
+            # Ensure dist/work/spec directories exist
+            dist_dir = project_root / "dist" / "test"
+            work_dir = project_root / "build" / "test"
+            spec_dir = project_root / "build" / "specs"
+            dist_dir.mkdir(parents=True, exist_ok=True)
+            work_dir.mkdir(parents=True, exist_ok=True)
+            spec_dir.mkdir(parents=True, exist_ok=True)
+
+            # Decide build name and try to remove any locked previous artifact.
+            base_name = "Uploader_test"
+            output_exe = dist_dir / f"{base_name}.exe"
+
+            def try_remove_with_retries(path: Path, retries: int = 5, delay: float = 0.5) -> bool:
+                """Try to remove a file with retries and backoff. Returns True if removed or not present."""
+                if not path.exists():
+                    return True
+                for attempt in range(retries):
+                    try:
+                        path.unlink()
+                        print(f"Removed existing file: {path}")
+                        return True
+                    except PermissionError:
+                        # Try to move/rename it out of the way
+                        try:
+                            backup = path.with_suffix(f".old.{int(time.time())}")
+                            path.rename(backup)
+                            print(f"Renamed locked file to: {backup}")
+                            return True
+                        except Exception:
+                            pass
+                        print(f"File locked, retrying in {delay} seconds ({attempt+1}/{retries})")
+                        time.sleep(delay)
+                        delay *= 1.5
+                    except Exception as e:
+                        print(f"Failed to remove existing file {path}: {e}")
+                        return False
+                return False
+
+            name_used = base_name
+            if not try_remove_with_retries(output_exe):
+                # If the previous artifact is locked, fall back to a unique name to avoid build failure
+                ts = datetime.now().strftime("%Y%m%dT%H%M%S")
+                name_used = f"{base_name}_{ts}"
+                print(f"Previous artifact appears locked; building as {name_used} to avoid PermissionError")
+
+            # Ensure cert folder is included for test builds as well (if present)
+            cert_dir = project_root / "cert"
+            if cert_dir.exists() and cert_dir.is_dir():
+                arg = f"{str(cert_dir)};cert"
+                # Avoid adding duplicate entries
+                if arg not in add_data_args:
+                    add_data_args += ["--add-data", arg]
+
+            PyInstaller.__main__.run([
+                str(project_root / "nice.py"),
+                "--onefile",
+                "--name",
+                name_used,
+                "--distpath",
+                str(dist_dir),
+                "--workpath",
+                str(work_dir),
+                "--specpath",
+                str(spec_dir),
+            ] + add_data_args + add_binary_args + [
+                # add some common hidden imports that PyInstaller sometimes misses
+                "--hidden-import",
+                "bs4",
+                "--hidden-import",
+                "requests",
+                "--hidden-import",
+                "nicegui",
+            ])
+        else:
+            print("Building using spec: nice_uploader.spec")
+            PyInstaller.__main__.run([str(project_root / "nice_uploader.spec")])
 
     if copy:
-        print("Copying file")
+        # Windows-only default destination used previously in the repo
-        source = Path(r"C:\Users\krugerro\Desktop\uploader\dist\anon_gui.exe" )
+        default_dest = Path(r"\\ict\Go\RCH\Shared\Dragon-Xray\rad-tools\uploader\Uploader")
-        dest =Path(r"T:\rad-tools\uploader" )
 
+        artifact_dir = project_root / "dist" / ("test" if test else "")
+        if not artifact_dir.exists():
+            artifact_dir = project_root / "dist"
 
+        # Look for a matching artifact. Prefer exe files named Uploader*.exe,
+        # then any .exe, then directories named Uploader* (onedir builds).
+        # Exclude obvious non-artifacts like log files.
+        candidates = []
+        # Uploader*.exe (preferred)
+        candidates.extend(sorted(artifact_dir.glob("Uploader*.exe")))
+        # any .exe
+        candidates.extend(sorted(artifact_dir.glob("*.exe")))
+        # onedir: directories starting with Uploader
+        candidates.extend([p for p in sorted(artifact_dir.glob("Uploader*")) if p.is_dir()])
 
-        n = 0
+        # Filter out files that look like logs or non-executables
-        while True:
+        def is_valid_artifact(p: Path) -> bool:
-            if n > 5: 
+            if not p.exists():
-                break
+                return False
+            if p.is_file():
+                # require .exe for files (Windows builds)
+                return p.suffix.lower() == ".exe"
+            if p.is_dir():
+                return True
+            return False
 
-            s = n if n > 0 else ""
+        valid = [p for p in candidates if is_valid_artifact(p)]
-            filename = Path(f"cris_tools{s}.exe")
+        if not valid:
+            print(f"No build artifact (.exe or Uploader directory) found in {artifact_dir}, skipping copy")
+            return
 
-            print(f"Destination: {filename}")
+        artifact = valid[0]
-            try:
-                shutil.copy(source, dest / filename)
-                break
 
-            except PermissionError:
+        dest_path = Path(dest) if dest else default_dest
-                n = n + 1
+        dest_path.mkdir(parents=True, exist_ok=True)
+
+        if artifact.is_file():
+            target = dest_path / artifact.name
+            print(f"Copying {artifact} -> {target}")
+            shutil.copy2(artifact, target)
+        else:
+            target = dest_path / artifact.name
+            print(f"Copying directory {artifact} -> {target}")
+            if target.exists():
+                shutil.rmtree(target)
+            shutil.copytree(artifact, target)
 
 
 if __name__ == "__main__":

cert/cert.pem

@@ -0,0 +1,21 @@
+-----BEGIN CERTIFICATE-----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+-----END CERTIFICATE-----

cert/cisco-cert.pem

@@ -0,0 +1,19 @@
+-----BEGIN CERTIFICATE-----
+MIIDJjCCAg6gAwIBAgIIUW6l3kYeVMEwDQYJKoZIhvcNAQELBQAwMTEOMAwGA1UE
+ChMFQ2lzY28xHzAdBgNVBAMTFkNpc2NvIFVtYnJlbGxhIFJvb3QgQ0EwHhcNMTYw
+NjI4MTUzNzUzWhcNMzYwNjI4MTUzNzUzWjAxMQ4wDAYDVQQKEwVDaXNjbzEfMB0G
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+ggEPADCCAQoCggEBAO7ZjfBSCaz5EMYSiWYoXjHPP/w7xFT4bXa82lOZ9CJJXDQw
+bZpBdmuqX9UWo769LIAaSUvkYEeZqcTsjrx/7juPKoOErhJY0cPK12LU9PbHXqEd
+XESIqBjdOC5oiIFHhTAKuuKRlL7rhPYkYhZtgdll4h0FLIG+xNsMVfzJb7z69X8Y
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+maelG7EyCVNVxARxn5waaphRvki1hkuqqrm3JdlV165zAOdSz3JKzRISQinCTQuT
++RK/w0qLsDTyOVO/mEIVWLXu/Z1NtuXgj/jhegcCAwEAAaNCMEAwDgYDVR0PAQH/
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+Y+V0t7SaEradv6tPG9DHX7PLwjQ/Xs95NGDIJTeFwCRqYUlBu9iZjIvKba0e0tST
+Vuyw2+P2HuWazjBPawGrbfyw+uO3KO4WnNGjMutJJ920o8B5M8gW1+Ye
+-----END CERTIFICATE-----

client.py

@@ -1,65 +0,0 @@
-import typer
-import requests
-
-app = typer.Typer()
-
-from bs4 import BeautifulSoup
-
-# client.py
-LOGIN_URL = "https://www.penracourses.org.uk/accounts/login"
-# ADD_URL = 'http://localhost/add'
-
-
-@app.command()
-def login(user: str, password: str):
-    rqst = requests.session()
-    rsp = rqst.get(LOGIN_URL)
-
-    token = BeautifulSoup(rsp.content, "html.parser").find("input").attrs["value"]#, attr={"name": "csrfmiddlewaretoken"}).attrs("value")
-
-    #token = rsp.cookies["csrftoken"]
-    #header = {"X-CSRFToken": token}
-    #cookies = {"csrftoken": token}
-
-    data = {
-            "username": user,
-            "password": password,  
-            "csrfmiddlewaretoken": token,
-            "next": "/",
-        }
-
-    print(data)
-    rqst.headers["Referer"] = LOGIN_URL
-
-    rsp = rqst.post(
-        LOGIN_URL,
-        data=data,
-        #headers=header,
-        #cookies=cookies
-    )
-
-    soup = BeautifulSoup(rsp.content, "html.parser")
-    print(token)
-    print(rqst.headers)
-    print(rqst.cookies)
-
-    login_success = False
-    if soup.find("button") and soup.find("button").find(string="Login"):
-        print("login fail")
-        pass
-    else:
-        print("login success")
-        login_success = True
-    #print(rqst.headers)
-    #print(rsp.content)
-
-    #new = rqst.get(
-    #    "https://www.penracourses.org.uk/api/atlas/get_cases_user"
-    #)
-
-    #print(new)
-    #print(new.content)
-
-
-if __name__ == "__main__":
-    app()

launcher/Cargo.toml

@@ -0,0 +1,12 @@
+[package]
+name = "launcher"
+version = "0.1.0"
+edition = "2021"
+
+# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html
+
+[dependencies]
+nng = "1.0.1"
+#rfd = "0.14.1"
+#toml = "0.8.13"
+#serde = { version = "1.0", features = ["derive"] }

launcher/src/main.rs

@@ -0,0 +1,81 @@
+use nng::{Protocol, Socket, Error};
+use std::process::Command;
+//use rfd::MessageDialog;
+//use serde::Deserialize;
+//use std::fs;
+//use std::path::PathBuf;
+
+//#[derive(Debug, Deserialize)]
+//struct Settings {
+//    cris_tools_path: PathBuf,
+//    port: toml::Value,
+//}
+
+//fn load_settings() -> Result<Settings, toml::de::Error> {
+//    // Read the entire contents of the file
+//    let contents = fs::read_to_string("uploader.toml")
+//        .expect("Failed to read settings file");
+//
+//    // Parse the file contents and deserialize into the Settings struct
+//    toml::from_str(&contents)
+//}
+
+fn main() {
+    //let settings = match load_settings() {
+    //    Ok(settings) => settings,
+    //    Err(e) => {
+    //        eprintln!("Failed to load settings: {:?}", e);
+    //        std::process::exit(1);
+    //    }
+    //};
+
+    // Create a socket of type REQ (request)
+    let socket = Socket::new(Protocol::Pair0).expect("Failed to create socket");
+
+    // Connect to the NNG server
+    //match socket.dial(format!("tcp://localhost:{}", settings.port).as_str()) {
+    match socket.dial(format!("tcp://localhost:9976").as_str()) {
+        Ok(_) => {
+            println!("Connected to server");
+        }
+        Err(e) => {
+            println!("Failed to connect to server: {:?}", e);
+            println!("Launching uploader tool");
+
+            let output = Command::new("Uploader.exe")
+                .spawn();
+
+            std::process::exit(1);
+        }
+    }
+
+    // Get the command line argument
+    //let arg = std::env::args().nth(1).expect("Missing argument");
+    //let arg = match std::env::args().nth(1) {
+    //    Some(arg) => arg,
+    //    None => {
+    //        eprintln!("Missing argument");
+    //        std::process::exit(1);
+    //    }
+    //};
+
+    // Send the argument to the server
+    //let message = "run/".to_string() + &arg;
+    let message = "loaded".to_string();
+    println!("Send message: {}", message);
+    socket.send(message.as_bytes()).expect("Failed to send message");
+
+    // Receive the response from the server
+    match socket.recv() {
+        Ok(response) => {
+            let response = String::from_utf8(response.to_vec()).expect("Failed to receive response");
+            println!("Response: {}", response);
+        }
+        Err(Error::TimedOut) => {
+            println!("Failed to receive response: Timeout");
+        }
+        Err(e) => {
+            println!("Failed to receive response: {:?}", e);
+        }
+    }
+}

local_file_picker.py

@@ -0,0 +1,82 @@
+import platform
+from pathlib import Path
+from typing import Optional
+
+from nicegui import events, ui
+
+
+class local_file_picker(ui.dialog):
+
+    def __init__(self, directory: str, *,
+                 upper_limit: Optional[str] = ..., multiple: bool = False, show_hidden_files: bool = False) -> None:
+        """Local File Picker
+
+        This is a simple file picker that allows you to select a file from the local filesystem where NiceGUI is running.
+
+        :param directory: The directory to start in.
+        :param upper_limit: The directory to stop at (None: no limit, default: same as the starting directory).
+        :param multiple: Whether to allow multiple files to be selected.
+        :param show_hidden_files: Whether to show hidden files.
+        """
+        super().__init__()
+
+        self.path = Path(directory).expanduser()
+        if upper_limit is None:
+            self.upper_limit = None
+        else:
+            self.upper_limit = Path(directory if upper_limit == ... else upper_limit).expanduser()
+        self.show_hidden_files = show_hidden_files
+
+        with self, ui.card():
+            self.add_drives_toggle()
+            self.grid = ui.aggrid({
+                'columnDefs': [{'field': 'name', 'headerName': 'File'}],
+                'rowSelection': 'multiple' if multiple else 'single',
+            }, html_columns=[0]).classes('w-96').on('cellDoubleClicked', self.handle_double_click)
+            with ui.row().classes('w-full justify-end'):
+                ui.button('Cancel', on_click=self.close).props('outline')
+                ui.button('Ok', on_click=self._handle_ok)
+        self.update_grid()
+
+    def add_drives_toggle(self):
+        if platform.system() == 'Windows':
+            import win32api
+            drives = win32api.GetLogicalDriveStrings().split('\000')[:-1]
+            self.drives_toggle = ui.toggle(drives, value=drives[0], on_change=self.update_drive)
+
+    def update_drive(self):
+        self.path = Path(self.drives_toggle.value).expanduser()
+        self.update_grid()
+
+    def update_grid(self) -> None:
+        paths = list(self.path.glob('*'))
+        if not self.show_hidden_files:
+            paths = [p for p in paths if not p.name.startswith('.')]
+        paths.sort(key=lambda p: p.name.lower())
+        paths.sort(key=lambda p: not p.is_dir())
+
+        self.grid.options['rowData'] = [
+            {
+                'name': f'📁 <strong>{p.name}</strong>' if p.is_dir() else p.name,
+                'path': str(p),
+            }
+            for p in paths
+        ]
+        if self.upper_limit is None and self.path != self.path.parent or \
+                self.upper_limit is not None and self.path != self.upper_limit:
+            self.grid.options['rowData'].insert(0, {
+                'name': '📁 <strong>..</strong>',
+                'path': str(self.path.parent),
+            })
+        self.grid.update()
+
+    def handle_double_click(self, e: events.GenericEventArguments) -> None:
+        self.path = Path(e.args['data']['path'])
+        if self.path.is_dir():
+            self.update_grid()
+        else:
+            self.submit([str(self.path)])
+
+    async def _handle_ok(self):
+        rows = await self.grid.get_selected_rows()
+        self.submit([r['path'] for r in rows])

local_folder_picker.py

@@ -0,0 +1,92 @@
+import platform
+from pathlib import Path
+from typing import Optional
+
+from nicegui import events, ui
+
+
+class local_folder_picker(ui.dialog):
+
+    def __init__(self, directory: str, *,
+                 upper_limit: Optional[str] = ..., multiple: bool = False, show_hidden_files: bool = False) -> None:
+        """Local File Picker
+
+        This is a simple file picker that allows you to select a file from the local filesystem where NiceGUI is running.
+
+        :param directory: The directory to start in.
+        :param upper_limit: The directory to stop at (None: no limit, default: same as the starting directory).
+        :param multiple: Whether to allow multiple files to be selected.
+        :param show_hidden_files: Whether to show hidden files.
+        """
+        super().__init__()
+
+        self.path = Path(directory).expanduser()
+        if upper_limit is None:
+            self.upper_limit = None
+        else:
+            self.upper_limit = Path(directory if upper_limit == ... else upper_limit).expanduser()
+        self.show_hidden_files = show_hidden_files
+
+        with self, ui.card():
+            self.add_drives_toggle()
+            self.grid = ui.aggrid({
+                'columnDefs': [{'field': 'name', 'headerName': 'File'}],
+                'rowSelection': 'multiple' if multiple else 'single',
+            }, html_columns=[0]).classes('w-96').on('cellDoubleClicked', self.handle_double_click)
+            with ui.row().classes('w-full justify-end'):
+                ui.button('Cancel', on_click=self.close).props('outline')
+                ui.button('Ok', on_click=self._handle_ok)
+        self.update_grid()
+
+    def add_drives_toggle(self):
+        if platform.system() == 'Windows':
+            import win32api
+            drives = win32api.GetLogicalDriveStrings().split('\000')[:-1]
+            self.drives_toggle = ui.toggle(drives, value=drives[0], on_change=self.update_drive)
+
+    def update_drive(self):
+        self.path = Path(self.drives_toggle.value).expanduser()
+        self.update_grid()
+
+    def update_grid(self) -> None:
+        paths = list(self.path.glob('*'))
+        if not self.show_hidden_files:
+            paths = [p for p in paths if not p.name.startswith('.')]
+        paths.sort(key=lambda p: p.name.lower())
+        paths.sort(key=lambda p: not p.is_dir())
+
+        self.grid.options['rowData'] = [
+            {
+                'name': f'📁 <strong>{p.name}</strong>' if p.is_dir() else p.name,
+                'path': str(p),
+            }
+            for p in paths
+        ]
+        if (self.upper_limit is None and self.path != self.path.parent) or \
+                (self.upper_limit is not None and self.path != self.upper_limit):
+            self.grid.options['rowData'].insert(0, {
+                'name': '📁 <strong>..</strong>',
+                'path': str(self.path.parent),
+            })
+        self.grid.update()
+
+    def handle_double_click(self, e: events.GenericEventArguments) -> None:
+        self.path = Path(e.args['data']['path'])
+        if self.path.is_dir():
+            self.update_grid()
+        else:
+            self.submit(self.path.parent)
+
+    async def _handle_ok(self):
+        rows = await self.grid.get_selected_rows()
+
+        if not rows:
+            self.submit(self.path)
+
+        else:
+            p = Path(rows[0]['path'])
+
+            if p.is_dir():
+                self.submit(p)
+            else:
+                self.submit(p.parent)

nice_uploader.spec

@@ -0,0 +1,67 @@
+# -*- mode: python ; coding: utf-8 -*-
+
+import os
+import importlib.util
+from pathlib import Path
+
+here = Path(__file__).resolve().parent
+project_root = here
+
+# Prepare datas and binaries lists; include icon resources
+datas = [
+    (str(project_root / 'icon'), 'icon'),
+    (str(project_root / 'icon' / 'icon1.png'), 'icon'),
+    # include user-supplied CA bundle folder (all files) so frozen app can use it
+    (str(project_root / 'cert'), 'cert')
+]
+binaries = []
+
+# Try to include pythonnet runtime DLLs so Python.Runtime.dll is available
+try:
+    spec_py = importlib.util.find_spec("pythonnet")
+    if spec_py and spec_py.submodule_search_locations:
+        pn_path = Path(spec_py.submodule_search_locations[0])
+        runtime_dir = pn_path / "runtime"
+        if runtime_dir.exists():
+            for f in runtime_dir.rglob("*.dll"):
+                # destination folder inside the frozen app
+                binaries.append((str(f), "pythonnet/runtime"))
+except Exception:
+    # best-effort; if we can't locate pythonnet at build time, user can add it manually
+    pass
+
+a = Analysis(
+    ['nice.py'],
+    pathex=[str(project_root)],
+    binaries=binaries,
+    datas=datas,
+    hiddenimports=['bs4', 'requests', 'nicegui', 'pynng'],
+    hookspath=[],
+    hooksconfig={},
+    runtime_hooks=[],
+    excludes=[],
+    noarchive=False,
+    optimize=0,
+)
+pyz = PYZ(a.pure)
+
+exe = EXE(
+    pyz,
+    a.scripts,
+    a.binaries,
+    a.datas,
+    [],
+    name='nice_uploader',
+    debug=False,
+    bootloader_ignore_signals=False,
+    strip=False,
+    upx=True,
+    upx_exclude=[],
+    runtime_tmpdir=None,
+    console=True,
+    disable_windowed_traceback=False,
+    argv_emulation=False,
+    target_arch=None,
+    codesign_identity=None,
+    entitlements_file=None,
+)

pywebview.py

@@ -0,0 +1,3 @@
+import webview
+webview.create_window('Hello world', 'https://pywebview.flowrl.com/hello')
+webview.start()

requirements.txt

@@ -1,12 +1,14 @@
 typer
-wxpython
 pydicom
 dicognito
 python-datauri
 bs4
 requests
-zmq
+pynng
 blake3
 loguru
 dicom2jpg
-pyinstaller
+pyinstaller
+nicegui
+pywebview
+psutil

ssl_check.py

@@ -0,0 +1,259 @@
+#!/usr/bin/env python3
+"""Standalone SSL check utility to be frozen for testing.
+
+Usage:
+  python ssl_check.py --url https://www.penracourses.org.uk --cert-dir ./cert
+
+What it does:
+  - Runs `openssl s_client -showcerts` against the host (if openssl on PATH).
+  - Extracts PEM cert blocks from the output and inspects each with `openssl x509`.
+  - Loads cert files from --cert-dir (PEM or DER) and converts DER to PEM as needed.
+  - Compares server chain Issuers with Subjects of bundled certs and reports which CA certs are missing.
+
+This script is intentionally small and self-contained so it can be frozen with PyInstaller
+for quick testing on Windows where the system openssl may be too old.
+"""
+
+from __future__ import annotations
+
+import argparse
+import base64
+import re
+import shutil
+import os
+import subprocess
+import sys
+import tempfile
+from pathlib import Path
+from typing import List, Tuple
+
+
+def find_openssl() -> str | None:
+    return shutil.which("openssl")
+
+
+def run_openssl_s_client(host: str, port: int = 443, tls_flag: str | None = None, timeout: int = 60) -> str:
+    openssl = find_openssl()
+    if not openssl:
+        raise RuntimeError("openssl not found on PATH")
+    cmd = [openssl, "s_client", "-showcerts", "-connect", f"{host}:{port}", "-servername", host]
+    if tls_flag:
+        cmd.append(tls_flag)
+    # give a newline so s_client won't wait for interactive input
+    proc = subprocess.run(cmd, input="\n", capture_output=True, text=True, timeout=timeout)
+    return proc.stdout + "\n" + proc.stderr
+
+
+def fetch_cert_via_proxy(host: str, port: int, proxy: str, timeout: int = 20) -> List[str]:
+    """Connect to proxy, issue CONNECT, perform TLS handshake and return PEM of the leaf cert."""
+    from urllib.parse import urlparse
+    import socket
+    import ssl
+    import base64
+
+    parsed = urlparse(proxy)
+    proxy_host = parsed.hostname
+    proxy_port = parsed.port or (443 if parsed.scheme == 'https' else 80)
+
+    auth_header = None
+    if parsed.username:
+        user = parsed.username
+        pwd = parsed.password or ""
+        cred = f"{user}:{pwd}".encode("utf-8")
+        auth_header = base64.b64encode(cred).decode("ascii")
+
+    s = socket.create_connection((proxy_host, proxy_port), timeout=timeout)
+    try:
+        connect_req = f"CONNECT {host}:{port} HTTP/1.1\r\nHost: {host}:{port}\r\n"
+        if auth_header:
+            connect_req += f"Proxy-Authorization: Basic {auth_header}\r\n"
+        connect_req += "\r\n"
+        s.sendall(connect_req.encode("ascii"))
+
+        # read response headers
+        resp = b""
+        while b"\r\n\r\n" not in resp:
+            chunk = s.recv(4096)
+            if not chunk:
+                break
+            resp += chunk
+            if len(resp) > 65536:
+                break
+
+        header = resp.split(b"\r\n\r\n", 1)[0].decode("ascii", errors="ignore")
+        # Simple status check
+        first_line = header.splitlines()[0] if header.splitlines() else ""
+        if not first_line.startswith("HTTP/") or ("200" not in first_line):
+            raise RuntimeError(f"Proxy CONNECT failed: {first_line}")
+
+        # Wrap the socket with SSL and fetch peer cert (leaf)
+        ctx = ssl.create_default_context()
+        with ctx.wrap_socket(s, server_hostname=host) as ss:
+            der = ss.getpeercert(True)
+            pem = ssl.DER_cert_to_PEM_cert(der)
+            return [pem]
+    except Exception:
+        s.close()
+        raise
+
+
+def extract_pem_blocks(s: str) -> List[str]:
+    pattern = re.compile(r"-----BEGIN CERTIFICATE-----(?:.|\n)*?-----END CERTIFICATE-----", re.M)
+    return pattern.findall(s)
+
+
+def write_pems_to_temp(pems: List[str]) -> List[Path]:
+    out = []
+    for i, pem in enumerate(pems):
+        f = Path(tempfile.gettempdir()) / f"ssl_check_cert_{i}.pem"
+        f.write_text(pem)
+        out.append(f)
+    return out
+
+
+def inspect_cert(path: Path) -> Tuple[str, str, str]:
+    """Return (subject, issuer, fingerprint) by calling openssl x509."""
+    openssl = find_openssl()
+    if not openssl:
+        raise RuntimeError("openssl not found on PATH")
+    proc = subprocess.run([openssl, "x509", "-in", str(path), "-noout", "-subject", "-issuer", "-fingerprint"], capture_output=True, text=True)
+    out = proc.stdout + proc.stderr
+    subj = re.search(r"subject=\s*(.*)", out)
+    issu = re.search(r"issuer=\s*(.*)", out)
+    fp = re.search(r"Fingerprint=([A-F0-9:]+)", out)
+    return (subj.group(1).strip() if subj else "", issu.group(1).strip() if issu else "", fp.group(1).strip() if fp else "")
+
+
+def load_cert_files_from_dir(cert_dir: Path) -> List[Path]:
+    files = []
+    if not cert_dir.exists():
+        return files
+    for pattern in ("*.pem", "*.crt", "*.cer"):
+        files.extend(sorted(cert_dir.glob(pattern)))
+
+    out = []
+    for f in files:
+        data = f.read_bytes()
+        if b"-----BEGIN CERTIFICATE-----" in data:
+            # already PEM
+            out.append(f)
+            continue
+        # assume DER -> convert to PEM
+        b64 = base64.encodebytes(data).decode("ascii")
+        pem = "-----BEGIN CERTIFICATE-----\n" + b64 + "-----END CERTIFICATE-----\n"
+        tmp = Path(tempfile.gettempdir()) / f"ssl_check_bundle_{f.name}.pem"
+        tmp.write_text(pem)
+        out.append(tmp)
+    return out
+
+
+def main(argv: List[str]) -> int:
+    p = argparse.ArgumentParser()
+    p.add_argument("--url", required=True, help="URL or host to check (eg https://www.penracourses.org.uk)")
+    p.add_argument("--cert-dir", default="cert", help="Directory with bundled certs")
+    p.add_argument("--force-tls12", action="store_true", help="Force -tls1_2 on openssl if initial attempt failed")
+    args = p.parse_args(argv)
+
+    # parse host/port
+    from urllib.parse import urlparse
+
+    parsed = urlparse(args.url if "//" in args.url else "//" + args.url)
+    host = parsed.hostname or args.url
+    port = parsed.port or 443
+
+    openssl = find_openssl()
+    if not openssl:
+        print("openssl not found on PATH; please install Git for Windows or OpenSSL and re-run.")
+        # we still attempt Python fallback but chain won't be available
+    else:
+        print(f"Using openssl: {openssl}")
+
+    out = ""
+    if openssl:
+        try:
+            out = run_openssl_s_client(host, port)
+            if "tlsv1 alert protocol version" in out or "SSL23_GET_SERVER_HELLO" in out:
+                print("Server rejected legacy TLS; retrying with -tls1_2")
+                out2 = run_openssl_s_client(host, port, tls_flag="-tls1_2")
+                out = out + "\n--- retry result ---\n" + out2
+        except subprocess.TimeoutExpired:
+            print("OpenSSL check timed out")
+        except Exception as e:
+            print(f"OpenSSL check failed: {e}")
+
+    # If openssl couldn't fetch a chain (or wasn't available), attempt a proxy-aware
+    # fetch if HTTPS_PROXY or HTTP_PROXY is set. This helps in corporate networks
+    # where direct TLS is blocked and a proxy must be used.
+    if not extract_pem_blocks(out):
+        proxy = None
+        for key in ("HTTPS_PROXY", "https_proxy", "HTTP_PROXY", "http_proxy"):
+            proxy = os.environ.get(key)
+            if proxy:
+                break
+        if proxy:
+            try:
+                print(f"Attempting proxy CONNECT via {proxy}")
+                pems = fetch_cert_via_proxy(host, port, proxy)
+                if pems:
+                    print(f"Fetched {len(pems)} PEM(s) via proxy")
+                    server_paths = write_pems_to_temp(pems)
+                    server_info = [inspect_cert(p) for p in server_paths]
+                    print("Server chain (proxy fetched):")
+                    for i, (s, iss, fp) in enumerate(server_info):
+                        print(f"[{i}] SUBJECT: {s}")
+                        print(f"    ISSUER: {iss}")
+                        print(f"    FP: {fp}")
+                else:
+                    print("Proxy CONNECT succeeded but no certs found")
+            except Exception as e:
+                print(f"Proxy CONNECT fetch failed: {e}")
+
+    # extract certs from openssl output if any
+    pems = extract_pem_blocks(out)
+    if pems:
+        print(f"Found {len(pems)} PEM blocks in openssl output")
+        server_paths = write_pems_to_temp(pems)
+        server_info = [inspect_cert(p) for p in server_paths]
+        print("Server chain:")
+        for i, (s, iss, fp) in enumerate(server_info):
+            print(f"[{i}] SUBJECT: {s}")
+            print(f"    ISSUER: {iss}")
+            print(f"    FP: {fp}")
+    else:
+        print("No certificate chain found from openssl (server may have rejected the handshake or openssl is incompatible)")
+        server_info = []
+
+    # load bundled certs
+    cert_dir = Path(args.cert_dir)
+    bundled = load_cert_files_from_dir(cert_dir)
+    print(f"Found {len(bundled)} bundled cert files in {cert_dir}")
+    bundled_info = [inspect_cert(p) for p in bundled]
+    subjects = {info[0]: p for info, p in zip(bundled_info, bundled)}
+
+    # Compare: ensure each server issuer is present in bundled subjects
+    missing = set()
+    for s, iss, fp in server_info:
+        if iss and iss not in subjects:
+            missing.add(iss)
+
+    if not server_info:
+        print("No server certs to compare; check network/openssl compatibility")
+        return 2
+
+    if not missing:
+        print("All server issuers are present in the bundled certs. OK")
+        return 0
+    else:
+        print("Missing issuer certificates in bundled certs:")
+        for m in missing:
+            print(" - ", m)
+        return 3
+
+
+if __name__ == "__main__":
+    try:
+        rc = main(sys.argv[1:])
+    except Exception as e:
+        print(f"ssl_check failed: {e}")
+        rc = 1
+    sys.exit(rc)

ssl_check.spec

@@ -2,19 +2,17 @@
 
 
 a = Analysis(
-    ['anon_gui.py'],
+    ['ssl_check.py'],
     pathex=[],
     binaries=[],
-    datas=[
+    datas=[],
-        ('icon\\icon1.ico', 'icon'),
-        ('icon\\icon1.png', 'icon'),
-    ],
     hiddenimports=[],
     hookspath=[],
     hooksconfig={},
     runtime_hooks=[],
     excludes=[],
     noarchive=False,
+    optimize=0,
 )
 pyz = PYZ(a.pure)
 
@@ -24,18 +22,17 @@ exe = EXE(
     a.binaries,
     a.datas,
     [],
-    name='anon_gui',
+    name='ssl_check',
     debug=False,
     bootloader_ignore_signals=False,
     strip=False,
     upx=True,
     upx_exclude=[],
     runtime_tmpdir=None,
-    console=False,
+    console=True,
     disable_windowed_traceback=False,
     argv_emulation=False,
     target_arch=None,
     codesign_identity=None,
     entitlements_file=None,
-    icon='icon\\icon1.ico'
 )

temp.log

@@ -0,0 +1,6 @@
+PS T:\rad-tools\uploader\Uploader_test> .\ssl_check.exe --url http://www.penracourses.org.uk --cert-dir ./cert
+Using openssl: C:\Sybase\OCS-15_0\bin\openssl.EXE
+Server rejected legacy TLS; retrying with -tls1_2
+No certificate chain found from openssl (server may have rejected the handshake or openssl is incompatible)
+Found 2 bundled cert files in cert
+No server certs to compare; check network/openssl compatibility

uploader.py

@@ -1,193 +0,0 @@
-import webview
-import time
-
-import sys
-
-from datauri import DataURI
-
-from pathlib import Path
-
-import pydicom
-import dicognito.anonymizer
-
-import typer
-from typing import List
-
-from watchdog.observers import Observer
-
-# from watchdog.events import LoggingEventHandler
-from watchdog.events import PatternMatchingEventHandler
-
-
-anonymizer = dicognito.anonymizer.Anonymizer()
-
-app = typer.Typer()
-
-
-def anonymize_file(filepath):
-    try:
-        with pydicom.dcmread(filepath) as dataset:
-            anonymizer.anonymize(dataset)
-            p = Path(filepath)
-            new_filename = Path(p.parent, f"{p.stem}_anon{p.suffix}")
-            dataset.save_as(new_filename)
-            return new_filename
-    except:
-        # Cannot anonymise so just return the same path
-        return filepath
-
-
-class PythonJavascriptApi:
-    def __init__(self):
-        self.cancel_heavy_stuff_flag = False
-
-    def init(self):
-        response = {"message": "Hello from Python {0}".format(sys.version)}
-        return response
-
-    def sayHelloTo(self, name):
-        response = {"message": "Hello {0}!".format(name)}
-        return response
-
-    def error(self):
-        raise Exception("This is a Python exception")
-
-
-class Watcher:
-    def __init__(self, window, anonymise: bool) -> None:
-        self.window = window
-        self.anonymise = anonymise
-
-    def on_created(self, event):
-        print(f"hey, {event.src_path} has been created!")
-        path = event.src_path
-        if self.anonymise:
-            path = anonymize_file(path)
-        
-        try:
-            file_uri = DataURI.from_file(path)
-        except FileNotFoundError:
-            print("File deleted...")
-            return
-
-        file_name = Path(path).name
-        self.injectFile(file_uri, file_name)
-
-    def on_deleted(self, event):
-        print(f"what the f**k! Someone deleted {event.src_path}!")
-
-    def on_modified(self, event):
-        print(f"hey buddy, {event.src_path} has been modified")
-
-    def on_moved(self, event):
-        print(f"ok ok ok, someone moved {event.src_path} to {event.dest_path}")
-
-    def injectFile(self, file_uri: DataURI, file_name: str):
-        current_url = webview.windows[0].get_current_url()
-        if current_url == "https://www.penracourses.org.uk/rapids/create/":
-            print(f"inject {file_name}")
-            self.window.evaluate_js(
-                f"""
-            function urltoFile(url, filename, mimeType){{
-                    return (fetch(url)
-                        .then(function(res){{ return res.arrayBuffer(); }})
-                        .then(function(buf){{return new File([buf], filename,{{type:mimeType}});}})
-                    );
-                }}
-        
-
-            $(document).ready(() => {{
-            //Usage example:
-            urltoFile('{file_uri}', '{file_name}', '{file_uri.mimetype}')
-            .then(function(file){{ 
-            
-            console.log(file);
-        
-            //inputs = $("#rapid-form input[type=file][id^=id_images-]");
-            inputs = extendInputs(1);
-            console.log(inputs);
-            el = inputs.get(0);
-            console.log(el);
-
-            let dT = new DataTransfer();
-            dT.clearData();
-            dT.items.add(file);
-            
-            el.files = dT.files;
-
-            // Manually fire the change event (qt doesn't seem to...)
-            $(el).change();
-
-            
-            }});
-
-            }});
-            """
-            )
-
-
-@app.command()
-def anatomy(filepath: str):
-    raise NotImplementedError
-
-
-@app.command()
-def rapid(watch_path: Path = "/home/ross/watch", anonymise: bool = True):
-
-    api = PythonJavascriptApi()
-    window = webview.create_window(
-        "Upload Rapid", "https://www.penracourses.org.uk/rapids/create/", js_api=api
-    )
-
-    # def on_loaded():
-    #    print('DOM is ready')
-    #    current_url = webview.windows[0].get_current_url()
-
-    #    if current_url == "https://www.penracourses.org.uk/rapids/create/":
-    #        #window.evaluate_js("alert('tent')")
-
-    #        for file_uri, file_name in uri_name_list:
-    #            #time.sleep(2)
-
-    #    ## unsubscribe event listener
-    #    #webview.windows[0].loaded -= on_loaded
-    #    #webview.windows[0].load_url('https://google.com')
-
-    # window.loaded += on_loaded
-    # window = upload_rapid(["/home/ross/Downloads/DICOM CT/DICOM CXR/STD1/SER1/CXR.dcm"])
-
-    patterns = ["*"]
-    ignore_patterns = ["*anon*"]
-    ignore_directories = False
-    case_sensitive = True
-    my_event_handler = PatternMatchingEventHandler(
-        patterns, ignore_patterns, ignore_directories, case_sensitive
-    )
-
-    watcher = Watcher(window, anonymise)
-    my_event_handler.on_created = watcher.on_created
-    my_event_handler.on_deleted = watcher.on_deleted
-    my_event_handler.on_modified = watcher.on_modified
-    my_event_handler.on_moved = watcher.on_moved
-    my_observer = Observer()
-
-    Path(watch_path).mkdir(parents=True, exist_ok=True)
-    my_observer.schedule(my_event_handler, watch_path, recursive=True)
-
-    my_observer.start()
-    # try:
-    #    while True:
-    #        time.sleep(1)
-    # except KeyboardInterrupt:
-    #    my_observer.stop()
-    #    my_observer.join()
-    webview.start(None, window, debug=True, gui="qt")
-
-
-
-# f = "/media/ross/f6200b79-c343-4882-a245-28fc06d43006/Downloads/temp/breasts.jpg"
-f = "/home/ross/Downloads/DICOM CT/DICOM CXR/STD1/SER1/CXR.dcm"
-
-
-if __name__ == "__main__":
-    app()

wxDicomViewer.py

@@ -1,384 +0,0 @@
-# ===================================================================
-# imViewer-Simple.py
-#
-#    An example program that opens uncompressed DICOM images and
-# converts them via numPy and PIL to be viewed in wxWidgets GUI
-# apps.  The conversion is currently:
-#
-#    pydicom->NumPy->PIL->wxPython.Image->wxPython.Bitmap
-#
-# Gruesome but it mostly works.  Surely there is at least one
-# of these steps that could be eliminated (probably PIL) but
-# haven't tried that yet and I may want some of the PIL manipulation
-# functions.
-#
-#    This won't handle RLE, embedded JPEG-Lossy, JPEG-lossless,
-# JPEG2000, old ACR/NEMA files, or anything wierd.  Also doesn't
-# handle some RGB images that I tried.
-#
-#    Have added Adit Panchal's LUT code.  It helps a lot, but needs
-# to be further generalized.  Added test for window and/or level
-# as 'list' type - crude, but it worked for a bunch of old MR and
-# CT slices I have.
-#
-# Testing:      moderate
-#               Tested on Windows 7 and MacOS 10.13 using numpy 1.15.2,
-#               Pillow 5.2.0, Python 2.7.13 / 3.6.5, and wxPython 4.0.3
-#
-# Originally written by Dave Witten:  Nov. 11, 2009
-# Updated by Aditya Panchal: Oct. 9, 2018
-# ===================================================================
-
-from io import BytesIO
-import pathlib
-from PIL import Image
-import dicom2jpg
-import pydicom
-import wx
-import cv2
-
-have_PIL = True
-try:
-    import PIL.Image
-except ImportError:
-    have_PIL = False
-
-have_numpy = True
-try:
-    import numpy as np
-except ImportError:
-    have_numpy = False
-
-# ----------------------------------------------------------------
-#  Initialize image capabilities.
-# ----------------------------------------------------------------
-
-wx.InitAllImageHandlers()
-
-
-def MsgDlg(window, string, caption='OFAImage', style=wx.YES_NO | wx.CANCEL):
-    """Common MessageDialog."""
-    dlg = wx.MessageDialog(window, string, caption, style)
-    result = dlg.ShowModal()
-    dlg.Destroy()
-    return result
-
-
-class ViewerFrame(wx.Frame):
-    """Class for main window."""
-
-    def __init__(self, parent, title, initial_file=None):
-        """Create the pydicom image example's main frame window."""
-
-        style = wx.DEFAULT_FRAME_STYLE | wx.SUNKEN_BORDER | wx.CLIP_CHILDREN
-
-        wx.Frame.__init__(
-            self,
-            parent,
-            id=-1,
-            title="",
-            pos=wx.DefaultPosition,
-            size=wx.Size(1024, 768),
-            style=style)
-
-        # --------------------------------------------------------
-        # Set up the menubar.
-        # --------------------------------------------------------
-        self.mainmenu = wx.MenuBar()
-
-        # Make the 'File' menu.
-        menu = wx.Menu()
-        item = menu.Append(wx.ID_ANY, '&Open...\tCtrl+O', 'Open file for editing')
-        self.Bind(wx.EVT_MENU, self.OnFileOpen, item)
-        item = menu.Append(wx.ID_ANY, 'E&xit', 'Exit Program')
-        self.Bind(wx.EVT_MENU, self.OnFileExit, item)
-        self.mainmenu.Append(menu, '&File')
-
-        # Attach the menu bar to the window.
-        self.SetMenuBar(self.mainmenu)
-
-        # --------------------------------------------------------
-        # Set up the main splitter window.
-        # --------------------------------------------------------
-        self.mainSplitter = wx.SplitterWindow(self)
-        self.mainSplitter.SetMinimumPaneSize(1)
-
-        # -------------------------------------------------------------
-        # Create the folderTreeView on the left.
-        # -------------------------------------------------------------
-        dsstyle = wx.TR_LINES_AT_ROOT | wx.TR_HAS_BUTTONS
-        self.dsTreeView = wx.TreeCtrl(self.mainSplitter, style=dsstyle)
-
-        # --------------------------------------------------------
-        # Create the ImageView on the right pane.
-        # --------------------------------------------------------
-        imstyle = wx.VSCROLL | wx.HSCROLL | wx.CLIP_CHILDREN
-        self.imView = wx.Panel(self.mainSplitter, style=imstyle)
-
-        self.imView.Bind(wx.EVT_PAINT, self.OnPaint)
-        self.imView.Bind(wx.EVT_ERASE_BACKGROUND, self.OnEraseBackground)
-
-        self.imView.Bind(wx.EVT_SIZE, self.OnSize)
-
-        # --------------------------------------------------------
-        # Install the splitter panes.
-        # --------------------------------------------------------
-        self.mainSplitter.SplitVertically(self.dsTreeView, self.imView)
-        self.mainSplitter.SetSashPosition(300, True)
-
-        # --------------------------------------------------------
-        # Initialize some values
-        # --------------------------------------------------------
-        self.dcmdsRoot = False
-        self.foldersRoot = False
-        self.loadCentered = True
-        self.bitmap = None
-        self.Show(True)
-
-        print(initial_file)
-
-        if initial_file is not None:
-            path = pathlib.Path(initial_file)
-            self.show_file2(path.name, str(path))
-
-    def OnFileExit(self, event):
-        """Exits the program."""
-        self.Destroy()
-        event.Skip()
-
-    def OnSize(self, event):
-        """Window 'size' event."""
-        self.Refresh()
-
-    def OnEraseBackground(self, event):
-        """Window 'erase background' event."""
-        pass
-
-    def populateTree(self, ds):
-        """ Populate the tree in the left window with the [desired]
-        dataset values"""
-        if not self.dcmdsRoot:
-            self.dcmdsRoot = self.dsTreeView.AddRoot(text="DICOM Objects")
-        else:
-            self.dsTreeView.DeleteChildren(self.dcmdsRoot)
-        self.recurse_tree(ds, self.dcmdsRoot)
-        self.dsTreeView.ExpandAll()
-
-    def recurse_tree(self, ds, parent, hide=False):
-        """ order the dicom tags """
-        for data_element in ds:
-            if isinstance(data_element.value, str):
-                text = str(data_element)
-                ip = self.dsTreeView.AppendItem(parent, text=text)
-            else:
-                ip = self.dsTreeView.AppendItem(parent, text=str(data_element))
-
-            if data_element.VR == "SQ":
-                for i, ds in enumerate(data_element.value):
-                    item_describe = data_element.name.replace(" Sequence", "")
-                    item_text = "%s %d" % (item_describe, i + 1)
-                    rjust = item_text.rjust(128)
-                    parentNodeID = self.dsTreeView.AppendItem(ip, text=rjust)
-                    self.recurse_tree(ds, parentNodeID)
-
-    # --- Most of what is important happens below this line ---------------------
-
-    def OnFileOpen(self, event):
-        """Opens a selected file."""
-        msg = 'Choose a file to add.'
-        dlg = wx.FileDialog(self, msg, '', '', '*.*', wx.FD_OPEN)
-        if dlg.ShowModal() == wx.ID_OK:
-            fullPath = dlg.GetPath()
-            imageFile = dlg.GetFilename()
-            # checkDICMHeader()
-            self.show_file2(imageFile, fullPath)
-
-    def OnPaint(self, event):
-        """Window 'paint' event."""
-        dc = wx.PaintDC(self.imView)
-        dc = wx.BufferedDC(dc)
-
-        # paint a background just so it isn't *so* boring.
-        dc.SetBackground(wx.Brush("WHITE"))
-        dc.Clear()
-        dc.SetBrush(wx.Brush("GREY", wx.CROSSDIAG_HATCH))
-        windowsize = self.imView.GetSize()
-        dc.DrawRectangle(0, 0, windowsize[0], windowsize[1])
-        bmpX0 = 0
-        bmpY0 = 0
-        if self.bitmap is not None:
-            if self.loadCentered:
-                bmpX0 = (windowsize[0] - self.bitmap.Width) / 2
-                bmpY0 = (windowsize[1] - self.bitmap.Height) / 2
-            dc.DrawBitmap(self.bitmap, int(bmpX0), int(bmpY0), False)
-
-    # ------------------------------------------------------------
-    #  ViewerFrame.ConvertWXToPIL()
-    #  Expropriated from Andrea Gavana's
-    #  ShapedButton.py in the wxPython dist
-    # ------------------------------------------------------------
-    def ConvertWXToPIL(self, bmp):
-        """ Convert wx.Image Into PIL Image. """
-        width = bmp.GetWidth()
-        height = bmp.GetHeight()
-        im = wx.EmptyImage(width, height)
-        im.fromarray("RGBA", (width, height), bmp.GetData())
-        return im
-
-    # ------------------------------------------------------------
-    #  ViewerFrame.ConvertPILToWX()
-    #  Expropriated from Andrea Gavana's
-    #  ShapedButton.py in the wxPython dist
-    # ------------------------------------------------------------
-    def ConvertPILToWX(self, pil, alpha=True):
-        """ Convert PIL Image Into wx.Image. """
-        if alpha:
-            image = wx.Image(pil.size[0], pil.size[1], clear=True)
-            image.SetData(pil.convert("RGB").tobytes())
-            image.SetAlpha(pil.convert("RGBA").tobytes()[3::4])
-        else:
-            image = wx.Image(pil.size[0], pil.size[1], clear=True)
-            new_image = pil.convert('RGB')
-            data = new_image.tobytes()
-            image.SetData(data)
-        return image
-
-    def get_LUT_value(self, data, window, level):
-        """Apply the RGB Look-Up Table for the given
-           data and window/level value."""
-        if not have_numpy:
-            raise ImportError("Numpy is not available. "
-                              "See http://numpy.scipy.org/ "
-                              "to download and install")
-
-        win = window
-        lvl = level
-
-        e = [
-            0, 255,
-            lambda data: ((data - (lvl - 0.5)) / (win - 1) + 0.5) * (255 - 0)
-        ]
-        return np.piecewise(data, [
-            data <= (lvl - 0.5 - (win - 1) / 2),
-            data > (lvl - 0.5 + (win - 1) / 2)
-        ], e)
-
-    # -----------------------------------------------------------
-    # ViewerFrame.loadPIL_LUT(dataset)
-    # Display an image using the Python Imaging Library (PIL)
-    # -----------------------------------------------------------
-    def loadPIL_LUT(self, dataset):
-        if not have_PIL:
-            raise ImportError("Python Imaging Library is not available."
-                              " See http://www.pythonware.com/products/pil/"
-                              " to download and install")
-        if 'PixelData' not in dataset:
-            raise TypeError("Cannot show image -- "
-                            "DICOM dataset does not have pixel data")
-
-        # can only apply LUT if these values exist
-        if ('WindowWidth' not in dataset) or ('WindowCenter' not in dataset):
-            bits = dataset.BitsAllocated
-            samples = dataset.SamplesPerPixel
-            if bits == 8 and samples == 1:
-                mode = "L"
-            elif bits == 8 and samples == 3:
-                mode = "RGB"
-            # not sure about this -- PIL source says is
-            # 'experimental' and no documentation.
-            elif bits == 16:
-                # Also, should bytes swap depending
-                # on endian of file and system??
-                mode = "I;16"
-            else:
-                msg = "Don't know PIL mode for %d BitsAllocated" % (bits)
-                msg += " and %d SamplesPerPixel" % (samples)
-                raise TypeError(msg)
-            size = (dataset.Columns, dataset.Rows)
-
-            # Recommended to specify all details by
-            # http://www.pythonware.com/library/pil/handbook/image.htm
-            im = PIL.Image.frombuffer(mode, size, dataset.PixelData, "raw",
-                                      mode, 0, 1)
-        else:
-            ew = dataset['WindowWidth']
-            ec = dataset['WindowCenter']
-            ww = int(ew.value[0] if ew.VM > 1 else ew.value)
-            wc = int(ec.value[0] if ec.VM > 1 else ec.value)
-            image = self.get_LUT_value(dataset.pixel_array, ww, wc)
-
-            # Convert mode to L since LUT has only 256 values:
-            # http://www.pythonware.com/library/pil/handbook/image.htm
-            im = PIL.Image.fromarray(image).convert('L')
-        return im
-
-    def show_file(self, imageFile, fullPath):
-        """ Load the DICOM file, make sure it contains at least one
-        image, and set it up for display by OnPaint().  ** be
-        careful not to pass a unicode string to read_file or it will
-        give you 'fp object does not have a defer_size attribute,
-        or some such."""
-        ds = pydicom.dcmread(str(fullPath))
-
-        # change strings to unicode
-        ds.decode()
-        self.populateTree(ds)
-        if 'PixelData' in ds:
-            self.dImage = self.loadPIL_LUT(ds)
-            if self.dImage is not None:
-                tmpImage = self.ConvertPILToWX(self.dImage, False)
-                self.bitmap = wx.Bitmap(tmpImage)
-                self.Refresh()
-
-
-    def show_file2(self, imageFile, fullPath):
-        """ Load the DICOM file, make sure it contains at least one
-        image, and set it up for display by OnPaint().  ** be
-        careful not to pass a unicode string to read_file or it will
-        give you 'fp object does not have a defer_size attribute,
-        or some such."""
-        ds = pydicom.dcmread(str(fullPath))
-
-        # change strings to unicode
-        ds.decode()
-        self.populateTree(ds)
-
-        with open(fullPath, "rb") as f:
-            img_data = dicom2jpg.io2img(BytesIO(f.read()))
-            img = Image.fromarray(img_data)
-            #img.show()
-
-            tmpImage = self.ConvertPILToWX(img, False)
-            self.bitmap = wx.Bitmap(tmpImage)
-            self.Refresh()
-
-
-# ------ This is just the initialization of the App  ----
-
-# =======================================================
-# The main App Class.
-# =======================================================
-
-
-class BasicDicomViewer(wx.App):
-    """Image Application."""
-    def __init__(self, initial_file=None, redirect=False, filename=None, useBestVisual=False, clearSigInt=True):
-        self.initial_file = initial_file
-        super().__init__(redirect=redirect, filename=filename, useBestVisual=useBestVisual, clearSigInt=clearSigInt)
-
-
-    def OnInit(self):
-        """Create the Image Application."""
-        print(1)
-        ViewerFrame(None, 'Simple Dicom Viewer', initial_file=self.initial_file)
-        return True
-
-
-# ------------------------------------------------------
-# If this file is running as main or a
-# standalone test, begin execution here.
-# ------------------------------------------------------
-
-if __name__ == '__main__':
-    app = BasicDicomViewer()
-    app.MainLoop()