.

atlas/admin.py

@@ -9,7 +9,7 @@ from .models import (
     Finding,
     SeriesFinding,
     Structure,
-    PathalogicalProcess,
+    PathologicalProcess,
     Presentation,
 )
 
@@ -35,13 +35,14 @@ admin.site.register(Finding)
 admin.site.register(Structure)
 admin.site.register(SeriesFinding)
 admin.site.register(Differential)
-admin.site.register(PathalogicalProcess)
+admin.site.register(PathologicalProcess)
 admin.site.register(Presentation)
 
 
 class DifferentialInline(admin.TabularInline):
     model = Differential
 
+
 class AtlasAdminForm(ModelForm):
     class Meta:
         model = Case
@@ -62,8 +63,8 @@ class AtlasAdminForm(ModelForm):
             # "normal": RadioSelect(
             # choices=[(True, 'Yes'),
             #     (False, 'No')])
-             "history": TinyMCE(attrs={"cols": 80, "rows": 30}),
-             "discussion": TinyMCE(attrs={"cols": 80, "rows": 30}),
+            "history": TinyMCE(attrs={"cols": 80, "rows": 30}),
+            "discussion": TinyMCE(attrs={"cols": 80, "rows": 30}),
         }
 
 
@@ -74,10 +75,7 @@ class AtlasAdmin(VersionAdmin):
     save_as = True
     view_on_site = True
 
-    inlines = (
-        DifferentialInline,
-    )
-
+    inlines = (DifferentialInline,)
 
 
 admin.site.register(Case, AtlasAdmin)

atlas/filters.py

@@ -1,6 +1,15 @@
 import django_filters
 
-from .models import Case, Condition, Finding, PathalogicalProcess, Presentation, Series, Structure, Subspecialty
+from .models import (
+    Case,
+    Condition,
+    Finding,
+    PathologicalProcess,
+    Presentation,
+    Series,
+    Structure,
+    Subspecialty,
+)
 from django.contrib.auth.models import User
 
 
@@ -23,13 +32,18 @@ class CaseFilter(django_filters.FilterSet):
     differential_case = django_filters.ModelMultipleChoiceFilter(
         label="Differential",
         field_name="differentialcase__condition",
-        #to_field_name="differential",
+        # to_field_name="differential",
         queryset=Condition.objects.all(),
     )
 
     class Meta:
         model = Case
-        fields = ("created_date", "open_access", "author", "differential_case")  # "site",
+        fields = (
+            "created_date",
+            "open_access",
+            "author",
+            "differential_case",
+        )  # "site",
 
     def __init__(
         self,
@@ -135,6 +149,7 @@ class StructureFilter(django_filters.FilterSet):
         )
         pass
 
+
 class PresentationFilter(django_filters.FilterSet):
     class Meta:
         model = Presentation
@@ -157,7 +172,7 @@ class PresentationFilter(django_filters.FilterSet):
 
 class PathologicalProcessFilter(django_filters.FilterSet):
     class Meta:
-        model = PathalogicalProcess
+        model = PathologicalProcess
         fields = ("name",)
 
     def __init__(
@@ -174,6 +189,7 @@ class PathologicalProcessFilter(django_filters.FilterSet):
         )
         pass
 
+
 class SubspecialtyFilter(django_filters.FilterSet):
     class Meta:
         model = Subspecialty

atlas/migrations/0021_rename_pathalogicalprocess_pathologicalprocess.py

@@ -0,0 +1,17 @@
+# Generated by Django 3.2.8 on 2021-12-07 15:23
+
+from django.db import migrations
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ('atlas', '0020_rename_pathalogical_process_case_pathological_process'),
+    ]
+
+    operations = [
+        migrations.RenameModel(
+            old_name='PathalogicalProcess',
+            new_name='PathologicalProcess',
+        ),
+    ]

atlas/models.py

@@ -163,7 +163,7 @@ class Subspecialty(models.Model):
         return format_html("<a href='{}'>{}</a>", self.get_absolute_url(), self.name)
 
 
-class PathalogicalProcess(models.Model):
+class PathologicalProcess(models.Model):
     name = models.CharField(max_length=255)
 
     def __str__(self) -> str:
@@ -230,7 +230,7 @@ class Case(models.Model):
 
     presentation = models.ManyToManyField(Presentation, blank=True)
 
-    pathological_process = models.ManyToManyField(PathalogicalProcess, blank=True)
+    pathological_process = models.ManyToManyField(PathologicalProcess, blank=True)
 
     differential = models.ManyToManyField(
         Condition, through=Differential, related_name="casedifferential"

atlas/tables.py

@@ -4,7 +4,7 @@ from django_tables2.utils import A
 from .models import (
     Case,
     Condition,
-    PathalogicalProcess,
+    PathologicalProcess,
     Presentation,
     Series,
     Structure,
@@ -244,12 +244,12 @@ class PresentationTable(tables.Table):
         verbose_name="Presentation",
     )
 
-    #edit = tables.LinkColumn(
+    # edit = tables.LinkColumn(
     #    "atlas:presentation_update", text="Edit", args=[A("pk")], orderable=False
-    #)
-    #delete = tables.LinkColumn(
+    # )
+    # delete = tables.LinkColumn(
     #    "atlas:presentation_delete", text="Delete", args=[A("pk")], orderable=False
-    #)
+    # )
     selection = tables.CheckBoxColumn(accessor="pk", orderable=False)
 
     subspecialty = tables.ManyToManyColumn(verbose_name="Subspecialty")
@@ -267,32 +267,33 @@ class PathologicalProcessTable(tables.Table):
         verbose_name="PathologicalProcess",
     )
 
-    #edit = tables.LinkColumn(
+    # edit = tables.LinkColumn(
     #    "atlas:pathological_process_update", text="Edit", args=[A("pk")], orderable=False
-    #)
-    #delete = tables.LinkColumn(
+    # )
+    # delete = tables.LinkColumn(
     #    "atlas:pathological_process_delete", text="Delete", args=[A("pk")], orderable=False
-    #)
+    # )
     selection = tables.CheckBoxColumn(accessor="pk", orderable=False)
 
     class Meta:
-        model = PathalogicalProcess
+        model = PathologicalProcess
         template_name = "django_tables2/bootstrap4.html"
         fields = ("name",)
         sequence = ("name",)
 
+
 class SubspecialtyTable(tables.Table):
     name = tables.Column(
         linkify=("atlas:subspecialty_detail", {"pk": tables.A("pk")}),
         verbose_name="Subspecialty",
     )
 
-    #edit = tables.LinkColumn(
+    # edit = tables.LinkColumn(
     #    "atlas:subspecialty_update", text="Edit", args=[A("pk")], orderable=False
-    #)
-    #delete = tables.LinkColumn(
+    # )
+    # delete = tables.LinkColumn(
     #    "atlas:subspecialty_delete", text="Delete", args=[A("pk")], orderable=False
-    #)
+    # )
     selection = tables.CheckBoxColumn(accessor="pk", orderable=False)
 
     class Meta:

atlas/views.py

@@ -40,7 +40,7 @@ from .forms import (
 from .models import (
     Case,
     Condition,
-    PathalogicalProcess,
+    PathologicalProcess,
     Presentation,
     Series,
     Examination,
@@ -210,7 +210,7 @@ def presentation_detail(request, pk):
 @login_required
 @user_is_atlas_checker
 def pathological_process_detail(request, pk):
-    pathological_process = get_object_or_404(PathalogicalProcess, pk=pk)
+    pathological_process = get_object_or_404(PathologicalProcess, pk=pk)
 
     # logging.debug(atlas.subspecialty.first().name.all())
     return render(
@@ -685,7 +685,7 @@ class PresentationView(LoginRequiredMixin, SingleTableMixin, FilterView):
 
 
 class PathologicalProcessView(LoginRequiredMixin, SingleTableMixin, FilterView):
-    model = PathalogicalProcess
+    model = PathologicalProcess
     table_class = PathologicalProcessTable
     template_name = "atlas/view.html"