Merge branch 'master' of ssh://161.35.163.87:/home/django/rad

longs/models.py

@@ -205,6 +205,7 @@ class Long(models.Model):
             #"feedback_image": [],
             #"annotations": [str(q.image_annotations)],
             "type": "long",
+            "cached": False,
         }
 
         return exam_question
@@ -393,14 +394,10 @@ class LongSeries(models.Model):
             else:
                 skipcount = skipcount + 1
 
-        print("skipped, no SliceLocation: {}".format(skipcount))
+        print("skipped, no {}: {}".format(field, skipcount))
 
         # ensure they are in the correct order
         slices = sorted(slices, key=lambda s: s[field].value)
-        #if field == "SliceLocation":
-        #    slices = sorted(slices, key=lambda s: s.SliceLocation)
-        #elif field == "InstanceNumber":
-        #    slices = sorted(slices, key=lambda s: s.InstanceNumber)
 
 
         #print(slices)
@@ -632,12 +629,6 @@ class CidUserAnswer(models.Model):
                 ans = ans.strip()
 
 
-    # def get_compare_string(self):
-    #     # strip here should be unneccasry (providing clean is now working)
-    #     s = self.answer.lower().strip()
-    #     s = s.translate(str.maketrans('', '', string.punctuation))
-    #     return s
-
     def is_marked(self):
         if self.score == "":
             return False
@@ -645,4 +636,6 @@ class CidUserAnswer(models.Model):
             return True
 
     def get_answer_score(self):
+        if self.score == "":
+            return ""
         return float(self.score)

longs/templates/longs/exam_scores_user.html

@@ -4,13 +4,28 @@
 <div class="longs">
     <h2>Exam: {{ exam.name }}</h2>
     <h3>Candidate: {{ cid }}</h3>
-    Answers:
+    Scores:
     <ul>{% for score in answers_marks %}
         <li class="user-answer-li">Question {{forloop.counter}}</li>
         <span class="user-answer-score user-answer-score-{{score}}"><pre>{{ans}}</pre> ({{score}})</span>
         {% endfor %}
     </ul>
     <br /> Total mark: {{ total_score }} / {{max_score}}
+    <div>
+        <h4>Answers</h4>
+    <ul class="long-answer">{% for a,b,c,d,e in answer_text %}
+        <li class="user-answer-li"><b>Question {{forloop.counter}}</b></li>
+        <ul>
+        <li class="user-answer-li">Observation</br><pre>{{a}}</pre></li>
+        <li class="user-answer-li">Interpretation</br><pre>{{b}}</pre></li>
+        <li class="user-answer-li">Principle Diagnosis</br><pre>{{c}}</pre></li>
+        <li class="user-answer-li">Differential Diagnosis</br><pre>{{d}}</pre></li>
+        <li class="user-answer-li">Management</br><pre>{{e}}</pre></li>
+        </ul>
+        {% endfor %}
+    </ul>
+
+    </div>
     <div>
         <a href="{% url 'cid_scores' cid %}">Other exams</a>
     </div>

longs/templates/longs/long_series_viewer.html

@@ -17,6 +17,7 @@ This series is not associated with any cases.
 <div>
 <a href="{% url 'longs:long_series_order_dicom' pk=series.pk %}" title="orders dicom by slice location">Order dicoms by slice location</a> 
 <a href="{% url 'longs:long_series_order_dicom_instance' pk=series.pk %}" title="orders dicom by instance number">Order dicoms by instance number</a> 
+<a href="{% url 'longs:long_series_order_dicom_SeriesInstanceUID' pk=series.pk %}" title="orders dicom by instance number">Order dicoms by SeriesInstanceUID</a> 
 <a href="{% url 'longs:long_series_order_upload_filename' pk=series.pk %}" title="orders dicom by uploaded filename">Order by uploaded filename</a> 
 </div>
 {% for image in series.images.all %}

longs/urls.py

@@ -13,6 +13,7 @@ urlpatterns = [
     path("series/<int:pk>", views.long_series_detail, name="long_series_detail"),
     path("series/<int:pk>/order_dicom", views.long_series_order_dicom, name="long_series_order_dicom"),
     path("series/<int:pk>/order_dicom_instance", views.long_series_order_dicom_instance, name="long_series_order_dicom_instance"),
+    path("series/<int:pk>/order_dicom_SeriesInstanceUID", views.long_series_order_dicom_SeriesInstanceUID, name="long_series_order_dicom_SeriesInstanceUID"),
     path("series/<int:pk>/order_upload_filename", views.long_series_order_upload_filename, name="long_series_order_upload_filename"),
     path("series/<int:pk>/delete", views.LongSeriesDelete.as_view(), name="long_series_delete"),
     # path("unchecked/", views.unchecked_list, name="unchecked_list"),

longs/views.py

@@ -889,21 +889,27 @@ def exam_scores_cid_user(request, pk, sk):
     #answers_and_marks = []
     answers_marks = []
     #answers = []
+    answer_text = []
 
     for q in questions:
         # Get user answer
         user_answer = q.cid_user_answers.filter(cid=cid).first()
 
 
+
+
         if not user_answer or user_answer is None:
             # skip if no answer
             #answers_marks.append("")
             #answers.append("")
             answer_score = 4
             #ans = "Not answered"
+            answer_text.append((("Not answered"),("Not answered"),("Not answered"),("Not answered"),("Not answered")))
         else:
             answer_score = user_answer.get_answer_score()
 
+            answer_text.append((user_answer.answer_observations, user_answer.answer_interpretation, user_answer.answer_principle_diagnosis, user_answer.answer_differential_diagnosis, user_answer.answer_management))
+
         if not exam.publish_results:
             answer_score = 0
         #answers.append(ans)
@@ -931,6 +937,7 @@ def exam_scores_cid_user(request, pk, sk):
             "answers_marks": answers_marks,
             "total_score": total_score,
             "max_score": max_score,
+            "answer_text": answer_text
             #"answers_and_marks": answers_and_marks,
         },
     )
@@ -955,6 +962,16 @@ def long_series_order_dicom_instance(request, pk):
 
     return redirect("longs:long_series_detail", pk=pk)
 
+@login_required
+def long_series_order_dicom_SeriesInstanceUID(request, pk):
+    series = get_object_or_404(LongSeries, pk=pk)
+    try:
+        series.order_by_dicom("SeriesInstanceUID")
+    except:
+        return HttpResponse('<h1>Series does not appear to contain dicoms (or field SeriesInstanceUID)</h1>')
+
+    return redirect("longs:long_series_detail", pk=pk)
+
 @login_required
 def long_series_order_upload_filename(request, pk):
     series = get_object_or_404(LongSeries, pk=pk)
@@ -986,6 +1003,9 @@ def question_json(request, pk):
 
     cache.set("{}_question_json_{}".format("longs", pk), question_json, 3600)
 
+    question.recreate_json = False
+    question.save()
+
     return JsonResponse(question_json)
 
 @login_required

rapids/admin.py

@@ -1,5 +1,5 @@
 from django.contrib import admin
-from .models import Rapid, RapidImage, Examination, Site, Abnormality, Region, Note, RapidCreationDefault, Answer, Exam
+from .models import Rapid, RapidImage, Examination, Site, Abnormality, Region, Note, RapidCreationDefault, Answer, Exam, CidUserAnswer
 
 import tagulous.admin
 
@@ -72,3 +72,9 @@ class RapidAdmin(VersionAdmin):
 admin.site.register(Rapid, RapidAdmin)
 
 #tagulous.admin.register(Rapid.condition)
+
+class CidUserAnswerAdmin(admin.ModelAdmin):
+    exclude = []
+    readonly_fields = ["created", "updated"]
+
+admin.site.register(CidUserAnswer, CidUserAnswerAdmin)

rapids/forms.py

@@ -65,13 +65,13 @@ class AbnormalityForm(ModelForm):
 class RapidCreationDefaultForm(ModelForm):
     class Meta:
         model = RapidCreationDefault
-        #fields = ["site"]
+        # fields = ["site"]
         exclude = ["author"]
 
 
 class RapidForm(ModelForm):
 
-    exams = ModelMultipleChoiceField(required=False, queryset=Exam.objects.all(),widget=FilteredSelectMultiple(verbose_name="Exams", is_stacked=False))
+    # exams = ModelMultipleChoiceField(required=False, queryset=Exam.objects.all(),widget=FilteredSelectMultiple(verbose_name="Exams", is_stacked=False))
     class Media:
         # Django also includes a few javascript files necessary
         # for the operation of this form element. You need to
@@ -84,11 +84,6 @@ class RapidForm(ModelForm):
         js = ["jsi18n.js", "tesseract.min.js"]
 
     def __init__(self, *args, **kwargs):
-        ModelForm.__init__(self, *args, **kwargs)
-        super(RapidForm, self).__init__(*args, **kwargs)
-        # self.fields['question'].widget.attrs = {'class': 'question-form', 'rows': 10, 'cols': 100}
-        # self.fields['feedback'].widget.attrs = {'class': 'feedback-form', 'rows': 10, 'cols': 100}
-
         if kwargs.get("instance"):
             # We get the 'initial' keyword argument or initialize it
             # as a dict if it didn't exist.
@@ -97,6 +92,11 @@ class RapidForm(ModelForm):
             # a list of primary key for the selected data.
             initial["exams"] = [t.pk for t in kwargs["instance"].exams.all()]
 
+        ModelForm.__init__(self, *args, **kwargs)
+        super(RapidForm, self).__init__(*args, **kwargs)
+        # self.fields['question'].widget.attrs = {'class': 'question-form', 'rows': 10, 'cols': 100}
+        # self.fields['feedback'].widget.attrs = {'class': 'feedback-form', 'rows': 10, 'cols': 100}
+
         self.fields["abnormality"] = ModelMultipleChoiceField(
             required=False,
             queryset=Abnormality.objects.all(),
@@ -117,7 +117,11 @@ class RapidForm(ModelForm):
         self.fields["laterality"] = ChoiceField(
             choices=Rapid.LATERALITY_CHOICES, required=False, widget=RadioSelect()
         )
-
+        self.fields["exams"] = ModelMultipleChoiceField(
+            required=False,
+            queryset=Exam.objects.all(),
+            widget=FilteredSelectMultiple(verbose_name="Exams", is_stacked=False),
+        )
 
     def save(self, commit=True):
         # Get the unsaved Pizza instance
@@ -152,7 +156,7 @@ class RapidForm(ModelForm):
             "region",
             "laterality",
             "examination",
-            #"site",
+            # "site",
             "feedback",
         ]
         # fields = ['question', 'feedback', 'subspecialty', 'references']
@@ -185,7 +189,7 @@ AnswerFormSet = inlineformset_factory(
     },
     exclude=[],
     can_delete=True,
-    extra=1,
+    extra=0,
     max_num=10,
 )
 

rapids/models.py

@@ -99,7 +99,7 @@ class Answer(models.Model):
             self.answer = self.answer.strip()
 
             s = self.answer.lower()
-            s = s.translate(str.maketrans('', '', string.punctuation))
+            s = s.translate(str.maketrans('', '', string.punctuation.replace("#", "")))
 
             self.answer_compare = s
 
@@ -352,6 +352,21 @@ class Exam(ExamBase):
         help_text="Exam time limit (in seconds). Default is 2100 secondse (35 minutes)", default=2100
     )
 
+    def get_normal_abnormal_breakdown(self):
+        # Inefficient but more extendible
+        questions = self.exam_questions.all()
+
+        normal = []
+        abnormal = []
+        for q in questions:
+            if q.normal:
+                normal.append(q)
+            else:
+                abnormal.append(q)
+        
+        return len(normal)
+
+
     def get_exam_json(self):
         questions = self.exam_questions.all()
 
@@ -443,7 +458,7 @@ class CidUserAnswer(models.Model):
             self.answer = self.answer.strip()
 
             s = self.answer.lower()
-            s = s.translate(str.maketrans('', '', string.punctuation))
+            s = s.translate(str.maketrans('', '', string.punctuation.replace("#", "")))
 
             self.answer_compare = s
 

rapids/templates/rapids/exam_overview.html

@@ -6,7 +6,8 @@
 <div class="rapids">
     <a href="{% url 'admin:rapids_exam_change' exam.id %}" title="Edit the Exam using the admin interface">Admin Edit</a>
     <h1>Exam: {{ exam.name }}</h1>
-    This exam has {{question_number}} questions. Time limit: {{exam.time_limit}} seconds.
+    This exam has {{question_number}} questions. Time limit: {{exam.time_limit}} seconds.<br/>
+    Normal {{ exam.get_normal_abnormal_breakdown }}
 
     <div class="parent-help" title="Click to enable / disable the exam">
         Exam active: <input type="checkbox" id="exam-active-switch" {% if exam.active %}checked{% endif %}> <span class="help-text">[When checked the exam will be available to take in the test system]</span>

rapids/views.py

@@ -355,6 +355,10 @@ class RapidUpdate(LoginRequiredMixin, AuthorOrCheckerRequiredMixin, UpdateView):
         return context
 
     def form_valid(self, form):
+        # save exam orders (there must be a better way to do this)
+        exam_orders = {}
+        for exam in self.object.exams.all():
+            exam_orders[exam] = list(exam.exam_questions.all())
 
         self.object = form.save(commit=False)
         self.object.save()
@@ -371,6 +375,14 @@ class RapidUpdate(LoginRequiredMixin, AuthorOrCheckerRequiredMixin, UpdateView):
             image_formset.save()
             answer_formset.instance = self.object
             answer_formset.save()
+
+            # restore exam orders
+            for exam in self.object.exams.all():
+                if exam in exam_orders and self.object in exam_orders[exam]:
+                    print(exam_orders[exam])
+                    exam.exam_questions.set(exam_orders[exam])
+                    exam.save()
+
             return response
         else:
             return super().form_invalid(form)
@@ -529,15 +541,14 @@ def loadJsonAnswer(answer):
 
     posted_answer = answer["ans"]
 
+    # qidn 1 does not hold answer data (but should always arrive prior to 2)
+    if answer["qidn"] == "1":
+        posted_answer = ""
+
     # Normal answers are just posted with the answer "Normal"
     normal = False
     if posted_answer == "Normal":
         normal = True
-        posted_answer = ""
-    # We can ignore the first ab
-    elif answer["qidn"] == "1" and posted_answer == "Abnormal":
-        return False
-
 
     if not exiting_answers:
         ans = CidUserAnswer(answer=posted_answer, normal=normal, cid=answer["cid"])
@@ -551,8 +562,10 @@ def loadJsonAnswer(answer):
         # Update an existing answer
         # should never be more than one (famous last words)
         ans = exiting_answers[0]
-        ans.normal = normal
-        ans.answer = posted_answer
+        if answer["qidn"] == "1":
+            ans.normal = normal
+        elif answer["qidn"] == "2": 
+            ans.answer = posted_answer
         ans.full_clean()
         ans.save()
 

templates/index.html

@@ -6,7 +6,9 @@
         <a href="{% url 'anatomy:index'%}">Anatomy</a>
         <a href="{% url 'physics:index'%}">Physics</a>
         <a href="{% url 'rapids:index'%}">Rapids</a>
+        {% if not request.user.is_authenticated %}
         <a href="{% url 'login'%}">Log in</a>
+        {% endif %}
         {% if request.user.is_staff %}<a href="{% url 'admin:index'%}">Admin</a>{% endif %}
         <a href="{% url 'password_reset'%}">Reset password</a>
 </div>