numerous updates to case collections

atlas/migrations/0038_casecollection_viewer_mode.py

@@ -0,0 +1,18 @@
+# Generated by Django 4.1.4 on 2024-02-12 12:18
+
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ('atlas', '0037_alter_seriesimage_image_blake3_hash'),
+    ]
+
+    operations = [
+        migrations.AddField(
+            model_name='casecollection',
+            name='viewer_mode',
+            field=models.CharField(choices=[('BUILT_IN', 'Built in viewer'), ('OHIF', 'OHIF Viewer'), ('BUILT_IN_WITH_OHIF', 'Built in viewer with OHIF Viewer option')], default='BUILT_IN', max_length=100),
+        ),
+    ]

atlas/models.py

@@ -699,6 +699,26 @@ class CaseCollection(ExamOrCollectionGenericBase):
         default=COLLECTION_TYPE_CHOICES.REPORT,
     )
 
+    class VIEWER_MODE_CHOICES(models.TextChoices):
+        BUILT_IN = (
+            "BUILT_IN",
+            _("Built in viewer"),
+        )
+        OHIF = (
+            "OHIF",
+            _("OHIF Viewer"),
+        )
+        BUILT_IN_WITH_OHIF = (
+            "BUILT_IN_WITH_OHIF",
+            _("Built in viewer with OHIF Viewer option"),
+        )
+
+    viewer_mode = models.CharField(
+        max_length=100,
+        choices=VIEWER_MODE_CHOICES.choices,
+        default=VIEWER_MODE_CHOICES.BUILT_IN,
+    )
+
     def get_absolute_url(self):
         return reverse("atlas:collection_detail", kwargs={"pk": self.pk})
 
@@ -708,6 +728,18 @@ class CaseCollection(ExamOrCollectionGenericBase):
     def __str__(self) -> str:
         return self.name
 
+    def show_built_in_viewer(self) -> bool:
+        return self.viewer_mode in (
+            self.VIEWER_MODE_CHOICES.BUILT_IN,
+            self.VIEWER_MODE_CHOICES.BUILT_IN_WITH_OHIF,
+        )
+
+    def show_ohif_viewer_link(self) -> bool:
+        return self.viewer_mode in (
+            self.VIEWER_MODE_CHOICES.OHIF,
+            self.VIEWER_MODE_CHOICES.BUILT_IN_WITH_OHIF,
+        )
+
     def review_only(self) -> bool:
         """Returns True if a users cannot submit responses
 
@@ -719,6 +751,17 @@ class CaseCollection(ExamOrCollectionGenericBase):
 
         return False
 
+    def in_review_mode(self) -> bool:
+        return self.review_only() or self.publish_results
+
+    # def can_answer(self) -> bool:
+    #    """Returns true if the user is able to answer questions in a collection
+    #    (independent of current collection state (e.g. published / not published))"""
+    #    if self.collection_type == self.COLLECTION_TYPE_CHOICES.REPORT:
+    #        return True
+
+    #    return False
+
     def get_case_by_index(
         self, case_index: int, case_count=False
     ) -> Case | Tuple[Case, int]:
@@ -892,8 +935,10 @@ class UncategorisedDicom(models.Model):
     def check_for_duplicates(self, image_hash):
         duplicate = None
 
-        if obj := UncategorisedDicom.objects.filter(image_blake3_hash=image_hash).first():
-            #duplicate = obj
+        if obj := UncategorisedDicom.objects.filter(
+            image_blake3_hash=image_hash
+        ).first():
+            # duplicate = obj
             return obj
 
         print(image_hash)
@@ -912,7 +957,9 @@ class UncategorisedDicom(models.Model):
 
             # if self.check_for_duplicates():
             #    return DuplicateDicom
-            image_blake3_hash = get_image_dicom_hash(None, dataset=ds, hash_type="blake3", direct_pixel_data=True)
+            image_blake3_hash = get_image_dicom_hash(
+                None, dataset=ds, hash_type="blake3", direct_pixel_data=True
+            )
 
             self.image_blake3_hash = image_blake3_hash
 

atlas/templates/atlas/add_case_to_collection.html

@@ -0,0 +1,13 @@
+<span id="add-case-form">
+<form hx-post="{% url 'atlas:add_case_to_collection' collection.id %}" hx-swap="outerHTML">
+    {% csrf_token %}
+    <label for="case">Select Case:</label>
+    <select name="case" id="case">
+        {% for case in cases %}
+            <option value="{{ case.id }}">{{ case.title }}</option>
+        {% endfor %}
+    </select>
+    <button type="submit">Add</button>
+    <button _="on click remove #add-case-form">Cancel</button>
+</form>
+</span

atlas/templates/atlas/case_form.html

@@ -53,7 +53,7 @@
     Use this form to create a atlas case. Existing associated image sets can be added using this form.
 
     {% if form.collection %}
-    <div class="alert alert-info" role="alert">Creating a case in the collection: <a href="{% url 'atlas:collection_detail' pk=form.exam.pk %}">{{form.collection.name}}</a></div>
+    <div class="alert alert-info" role="alert">Creating a case in the collection: <a href="{% url 'atlas:collection_detail' pk=form.collection.pk %}">{{form.collection.name}}</a></div>
     {% endif %}
     <form action="" method="post" enctype="multipart/form-data" id="atlas-form">
         {% csrf_token %}

atlas/templates/atlas/collection_case_view_take.html

@@ -28,29 +28,42 @@
         </div>
     {% endif %}
 
-    <div class="pre-whitespace multi-image-block">
-        <details open>
-            <summary>
-                Images
-            </summary>
-            {% for series in series_list %}
-                <span class="series-block">
-                    <a href="#" onclick='window.loadDicomViewer(window.images[{{forloop.counter0}}])'>
-                        <span>
-                            <span class="series-block-series-number">Series {{ forloop.counter }}:</span>
-                            {{series.get_block}}
-                        </span>
-                    </a>
-                </span>
-            {% endfor %}
-        </details>
-    </div>
 
-    <div>
-        <div id="single-dicom-viewer" class="dicom-viewer" data-images="" data-annotations=''>
+    {% if collection.show_ohif_viewer_link %}
+        <div>
+            <a href="https://viewer.penracourses.org.uk/viewer/dicomjson?url=https://www.penracourses.org.uk{% url 'atlas:case_dicom_json' case.pk %}">View case in OHIF</a>
+        </div>
+    {% endif %}
+
+
+
+    {% if collection.show_built_in_viewer %}
+        <div class="pre-whitespace multi-image-block">
+            <details open>
+                <summary>
+                    Images
+                </summary>
+                {% for series in series_list %}
+                    <span class="series-block">
+                        <a href="#" onclick='window.loadDicomViewer(window.images[{{forloop.counter0}}])'>
+                            <span>
+                                <span class="series-block-series-number">Series {{ forloop.counter }}:</span>
+                                {{series.get_block}}
+                            </span>
+                        </a>
+                    </span>
+                {% endfor %}
+            </details>
         </div>
 
-    </div>
+        <div>
+            <div id="single-dicom-viewer" class="dicom-viewer" data-images="" data-annotations=''>
+            </div>
+
+        </div>
+    {% else %}
+    {% endif %}
+
     {% if show_discussion and case.discussion %}
         <p>
             <details>

atlas/templates/atlas/collection_detail.html

@@ -21,8 +21,14 @@
     <p>This collection will be available to view/take <a href='{{collection.get_take_url}}'>here</a>
 
     {% if can_edit %}
-
         <p><button id='button-edit-order' title='click and drag questions to change order' data-posturl="{% url 'atlas:exam_json_edit' pk=collection.pk %}">Edit case order / Delete cases</button></p>
+        <p><button id='button-add-case' 
+            title='click to add a case to this collection'
+            hx-get="{% url 'atlas:add_case_to_collection' collection.pk %}" hx-swap="innerHTML" hx-target="#case-list">
+                        Add case
+        </button>
+        <div id='case-list'></div>
+    </p>
     {% endif %}
     {% include 'exam_overview_js.html' %}
 {% endblock %}

atlas/templates/atlas/collection_take_overview.html

@@ -7,12 +7,15 @@
 
     <h2>Collection: {{collection.name}}
 
-        {% if collection.publish_results or cid_user_exam.completed %}
+        {% if collection.in_review_mode or cid_user_exam.completed %}
             <span class="stamp-white">REVIEW</span>
         {% endif %}
     </h2>
 
-    {{answer_count}} out of {{collection_length}} cases answered. Click to go to case.
+
+    {% if not collection.review_only %}
+        {{answer_count}} out of {{collection_length}} cases answered. Click to go to case.
+    {% endif %}
     <div class="sba-finish-list">
         <ul>
             {% for question, answer, self_review in question_answer_tuples %}
@@ -40,9 +43,8 @@
         </ul>
     </div>
 
+
     Start time: {{cid_user_exam.start_time}}
-
-
     {% if collection.self_review %}
         <p>Completed: <span id="completed-state">{{cid_user_exam.completed}}</span></p>
 

atlas/templates/atlas/user_collections.html

@@ -3,6 +3,8 @@
 {% block content %}
 <h2>Collections</h2>
 
+The following collections are available for you to view / take.
+
     
     <ul>
     {% for collection in collections %}

atlas/urls.py

@@ -32,6 +32,7 @@ urlpatterns = [
     path("author/<int:pk>/", views.author_detail, name="author_detail"),
     path("author/", views.author_list, name="author_list"),
     path("case/", views.CaseView.as_view(), name="case_view"),
+    path("collection/<int:collection_id>/add_case", views.add_case_to_collection, name="add_case_to_collection"),
     path("collection/", views.CollectionView.as_view(), name="collection_view"),
     path("collection/user", views.user_collections, name="user_collections"),
     path("uploads", views.user_uploads, name="user_uploads"),

atlas/views.py

@@ -136,6 +136,14 @@ import difflib
 
 logger = logging.getLogger(__name__)
 
+def get_cases_available_to_user(user):
+    """Returns a queryset of cases available to the user"""
+    return Case.objects.filter(author=user) | Case.objects.filter(open_access=True)
+    if user.is_superuser:
+        return Case.objects.all()
+    else:
+        return Case.objects.filter(author=user) | Case.objects.filter(open_access=True)
+
 
 class AuthorOrCheckerRequiredMixin(object):
     def get_object(self, *args, **kwargs):
@@ -370,6 +378,25 @@ def user_collections(request):
 
     return render(request, "atlas/user_collections.html", {"collections": collections})
 
+def add_case_to_collection(request, collection_id):
+    if not request.htmx:
+        return Http404
+
+
+    collection = get_object_or_404(CaseCollection, pk=collection_id)
+
+    if request.method == "POST":
+        case = get_object_or_404(Case, pk=request.POST["case"])
+        print(case)
+        collection.cases.add(case)
+        return HttpResponse("Case added to collection")
+
+
+    #if request.method == "POST":
+
+    cases = get_cases_available_to_user(request.user)
+
+    return render(request, "atlas/add_case_to_collection.html", {"cases": cases, "collection": collection})
 
 @login_required
 def user_uploads_series(request, series_instance_uid: str):