improve condition filters

atlas/filters.py

@@ -25,6 +25,7 @@ def get_authors(request):
 
     return queryset
 
+
 def get_cases(request):
     if request is None:
         return Case.objects.none()
@@ -36,6 +37,7 @@ def get_cases(request):
 
     return queryset
 
+
 def get_series(request):
     if request is None:
         return Series.objects.none()
@@ -47,6 +49,7 @@ def get_series(request):
 
     return queryset
 
+
 class CaseCollectionFilter(django_filters.FilterSet):
     author = django_filters.ModelMultipleChoiceFilter(
         queryset=get_authors, null_label="No author"
@@ -72,12 +75,15 @@ class CaseCollectionFilter(django_filters.FilterSet):
         request=None,
     ):
         if not request.user.groups.filter(name="atlas_editor").exists():
-            queryset = queryset.prefetch_related("author").filter(author__id=request.user.id)
+            queryset = queryset.prefetch_related("author").filter(
+                author__id=request.user.id
+            )
         super(CaseCollectionFilter, self).__init__(
             data=data, queryset=queryset, prefix=prefix, request=request
         )
         pass
 
+
 class CaseFilter(django_filters.FilterSet):
     author = django_filters.ModelMultipleChoiceFilter(
         queryset=get_authors, null_label="No author"
@@ -111,7 +117,9 @@ class CaseFilter(django_filters.FilterSet):
         request=None,
     ):
         if not request.user.groups.filter(name="atlas_editor").exists():
-            queryset = queryset.prefetch_related("author").filter(author__id=request.user.id)
+            queryset = queryset.prefetch_related("author").filter(
+                author__id=request.user.id
+            )
         super(CaseFilter, self).__init__(
             data=data, queryset=queryset, prefix=prefix, request=request
         )
@@ -151,7 +159,14 @@ class SeriesFilter(django_filters.FilterSet):
 class ConditionFilter(django_filters.FilterSet):
     class Meta:
         model = Condition
-        fields = {"name": ["contains"], "primary": ["exact"], "synonym": ["exact"], "parent": ["exact"], "subspecialty": ["exact"]}
+        fields = {
+            "name": ["icontains"],
+            "primary": ["exact"],
+            "synonym": ["exact"],
+            "parent": ["exact"],
+            "subspecialty": ["exact"],
+            "rcr_curriculum": ["exact"],
+        }
 
     def __init__(
         self,

atlas/templates/atlas/condition_detail.html

@@ -15,7 +15,7 @@
     <div>
         <h3>Name: {{condition.name}}</h3>
         Primary name: {{condition.primary}}<br />
-        Synonyms:fyi
+        Synonyms:
         {% for syn in condition.synonym.all  %}
             <a href="{{syn.get_absolute_url}}">{{syn}}</a>
         {% endfor %}<br />

helpers/images.py

@@ -159,6 +159,7 @@ def get_image_dicom_hash(img, dataset=None) -> (str, bool):
     if dataset is None:
         dataset = pydicom.dcmread(img)
 
+    # TODO: improve?
     md5 = hashlib.md5()
     first = True
     for i in dataset.pixel_array.astype(str).flatten():
@@ -177,24 +178,7 @@ def get_image_hash(img) -> (str, bool):
     hash = "1234"
     try:
         # and generate a hash from the pixel data
-        # TODO: improve?
-        dataset = pydicom.dcmread(img)
-        # flatten = dataset.pixel_array.astype(str).flatten()
-        # print("flatteded")
-        # pre_join = ",".join(flatten)
-        # print(pre_join)
-        # hash = hashlib.md5(pre_join.encode()).hexdigest()
-        # ----
-        md5 = hashlib.md5()
-        first = True
-        for i in dataset.pixel_array.astype(str).flatten():
-            if first:
-                first = False
-                md5.update(f"{i}".encode())
-            else:
-                md5.update(f",{i}".encode())
-
-        hash = md5.hexdigest()
+        hash = get_image_dicom_hash(img)
         is_dicom = True
         # ----
 

requirements.txt

@@ -36,4 +36,5 @@ git+https://github.com/jazzband/django-cookie-consent#django-cookie-consent
 django-crispy-forms
 django-ninja
 crispy-bootstrap4
-django-rich
+django-rich
+ipython